Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00961 ATGTCGCCGAGCTTCGTCTTTGACCCTCCTAGCGTTGAAGAAATCGAACACGAAGAACACAAAGAAGAAGAAGAATCAGTAGGAGAACCACAGTCAGAATCAGAGTCAGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCAAAAGCACTCAAACAACGTTCCACGCCTCTCGTTGCTGAGCTTGACCACAGCTTCGAGTCCGAACCTGATGAACAAGAAGAAGATGAAGAAGAGGGTAATGATGGTGACAGCAAATCCTTTTTTGCTTCTTCTAATGGAACCTCTTTCCATGTTGATTCCTTCTTGCAGTTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTCGGGTATTCTAAACCAACACCAATTCAGGCAGCTTGTATTCCATTGGCATTGAGTGGTCGTGATATATGTGGTAGTGCCATTACCGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTATCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCGAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACCGAGAATTAA 963 0.46 MSPSFVFDPPSVEEIEHEEHKEEEESVGEPQSESESEEHARRSTTSVDEKISKALKQRSTPLVAELDHSFESEPDEQEEDEEEGNDGDSKSFFASSNGTSFHVDSFLQFNLSRPLLRACEAFGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTREVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00961 320 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Gma09g00961 320 Gene3D - 67 307 IPR027417 -
Gma09g00961 320 PANTHER RNA HELICASE 256 319 - -
Gma09g00961 320 PANTHER RNA HELICASE 25 231 - -
Gma09g00961 320 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Gma09g00961 320 MobiDBLite consensus disorder prediction 1 88 - -
Gma09g00961 320 Pfam DEAD/DEAH box helicase 128 294 IPR011545 GO:0003676|GO:0005524
Gma09g00961 320 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 305 IPR014001 -
Gma09g00961 320 CDD DEADc_DDX27 115 306 - -
Gma09g00961 320 PANTHER BNAA01G17110D PROTEIN 25 231 - -
Gma09g00961 320 PANTHER BNAA01G17110D PROTEIN 256 319 - -
Gma09g00961 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 305 IPR027417 -
Gma09g00961 320 SMART ultradead3 123 320 IPR014001 -
Gma09g00961 320 MobiDBLite consensus disorder prediction 71 86 - -
Gma09g00961 320 MobiDBLite consensus disorder prediction 11 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00961 Gma-Chr9 18681906 18689865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00961 75 305 Eukaryotic Initiation Factors Gene Family AT3G13920 34.894 1.61e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00961 K13181 - gmx:100776684 501.901