Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00949 ATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTATCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGAATATGATAGACCATTTACGCAATGCTATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATCCATGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTAATATGTTGTTTTCATCAACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCCCTGCCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACCGAGGAGGTTGTTAGAATACGAAGAATGAGTGAAGTAAATCAGGAAGCTGTTCTTCTTTCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAACCTGCAAATAGATTGAAAATTATATTTGGATTAGCTGGCTTAAAAGCTTCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCAGCGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAAATGTGACTGCCCGTGGCCTTGACATTATTGGTGTTCAAATAGTTATCAACCTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCTGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCATGAAGAGAGAGAAGAAAGAGTTCTAAGAAAAGCTGAAATGGAGGCCACAAAAGGTATTGCCGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCATCCAAGGTGAAATGTTTACCTGTGTTGATAAGAAATGAAATGATTGTAAACAGGCATCCATGGATAAGAGTTGCGAGTTCTGGGAAAGAGGTTATTAGTGCTGAACAAGCTGAAGACCTCAGAATGAAGGAGAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGTAGAAAGTTGGAAGCAGCTAGAGAGATGGAGGAGGAGGAGGATGACAAACAAGTAGAGACTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCCTTAGATTCTGGCAAGATTGTGGAGAAGAATAAAATGAAATCTAATAATAATTCCCGAAAAACTCCTTCAAGGACAGCAGAGATGCGGGAGTTATTCCAGACTGACATGAAGGATAAAAAGTCAAAAAGAAGAGGTGTGGGAGGAGGAAAGAAGTCAAAGAGTTCATTGAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 1584 0.4211 MIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMNMIDHLRNAMSVDLDDLAVLIHDEADRLLELGFSAEIQELNMLFSSTMTEEVDELIKLSLPKPLRLSADPSTKRPATLTEEVVRIRRMSEVNQEAVLLSMCSKTFTSKVIIFSGTKQPANRLKIIFGLAGLKASELHGNLTQAQQRLEALEQFRKQQVDFLVATNVTARGLDIIGVQIVINLACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQMEDQISEVLHEEREERVLRKAEMEATKGIAENMIAHREEIFSRPKRTWFVTEKEKKLAAKASKVKCLPVLIRNEMIVNRHPWIRVASSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMEEEEDDKQVETKGGNKKEKGGMSLVDLAYRRAKAVKAVKKALDSGKIVEKNKMKSNNNSRKTPSRTAEMRELFQTDMKDKKSKRRGVGGGKKSKSSLKSKSRYKRK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00949 527 MobiDBLite consensus disorder prediction 393 443 - -
Gma09g00949 527 PANTHER BNAA01G17110D PROTEIN 69 506 - -
Gma09g00949 527 Coils Coil 407 427 - -
Gma09g00949 527 MobiDBLite consensus disorder prediction 414 440 - -
Gma09g00949 527 Pfam DEAD/DEAH box helicase 3 91 IPR011545 GO:0003676|GO:0005524
Gma09g00949 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 120 284 IPR001650 -
Gma09g00949 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 265 IPR027417 -
Gma09g00949 527 SMART helicmild6 163 245 IPR001650 -
Gma09g00949 527 MobiDBLite consensus disorder prediction 469 527 - -
Gma09g00949 527 PANTHER BNAA01G17110D PROTEIN 1 42 - -
Gma09g00949 527 Pfam Helicase conserved C-terminal domain 144 245 IPR001650 -
Gma09g00949 527 MobiDBLite consensus disorder prediction 485 504 - -
Gma09g00949 527 Coils Coil 176 196 - -
Gma09g00949 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 109 IPR014001 -
Gma09g00949 527 PANTHER RNA HELICASE 69 506 - -
Gma09g00949 527 CDD SF2_C_DEAD 121 254 - -
Gma09g00949 527 Gene3D - 122 369 IPR027417 -
Gma09g00949 527 MobiDBLite consensus disorder prediction 505 527 - -
Gma09g00949 527 PANTHER RNA HELICASE 1 42 - -
Gma09g00949 527 Gene3D - 1 117 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00949 Gma-Chr9 18220087 18228438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00949 10 268 Eukaryotic Initiation Factors Gene Family AT5G11170 29.151 2.81e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00949 K13181 - gmx:100782727 788.489