Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00890 ATGGCTTTCCACGAGCATCTACCGCACGAAATCACGTTCCAGCCGTTCGCGGAGGAGCAGCAGCAGCAGCAGTTAGGTCAGAGCCGGGACATGCAGCGGCTCCTGCCACTCTCGGGCGGGGCGCCGACGTGGTTGAACAACAGCAACGCCGCCACGCTCCGCCAGCAGAATTTCCTCCACCTGCAGCCGGAATCCGCCGCGACGGCGGCGCAGCAAAACGACGACGTTCGTGCTATGGATCGGAACCGGACCGAGAGCAACTCTGAAGCGGACGATTTGGCGGAATACAAAGCAGATATTTTAGGTCACCCTCTCTACGACCAGCTCCTATCGGCGCACGTCTCGTGCTTGAGAATCGCCACGCCCGTTGACCAGCTCCCAAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTCGACAAGTACTCCGGCCTCGGAAATGGAAACGGCGTCGTCGATGACAAAGAGCTCGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGTTGGAACAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGCGAAGGAACGGGTGCAACAATGTCCGACAATGAAGAAGATCAGGCAGAGAGTAATGCAAACTTATACGAAGGAGGCATGGATGGAGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACTGAGACTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGCTGAAGCACGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGATATAAGAGAGGAAATTCTACGAAAGAGAAGAGCCGGGAAGCTACCCGGCGACACAACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAGGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGGTGGGTTTCTAGTTTCTTA 1089 0.5152 MAFHEHLPHEITFQPFAEEQQQQQLGQSRDMQRLLPLSGGAPTWLNNSNAATLRQQNFLHLQPESAATAAQQNDDVRAMDRNRTESNSEADDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDNEEDQAESNANLYEGGMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKRWVSSFL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00890 363 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 25 359 - -
Gma09g00890 363 MobiDBLite consensus disorder prediction 340 363 - -
Gma09g00890 363 Pfam ELK domain 260 281 IPR005539 GO:0003677
Gma09g00890 363 SUPERFAMILY Homeodomain-like 282 346 IPR009057 -
Gma09g00890 363 Gene3D - 279 356 - -
Gma09g00890 363 Pfam KNOX1 domain 96 137 IPR005540 GO:0003677|GO:0005634
Gma09g00890 363 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Gma09g00890 363 MobiDBLite consensus disorder prediction 1 28 - -
Gma09g00890 363 MobiDBLite consensus disorder prediction 76 90 - -
Gma09g00890 363 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Gma09g00890 363 CDD homeodomain 283 344 IPR001356 GO:0003677
Gma09g00890 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 359 - -
Gma09g00890 363 SMART HOX_1 282 347 IPR001356 GO:0003677
Gma09g00890 363 MobiDBLite consensus disorder prediction 65 90 - -
Gma09g00890 363 SMART KNOX2_2 148 203 IPR005541 GO:0003677|GO:0005634
Gma09g00890 363 SMART ELK_2 260 281 IPR005539 GO:0003677
Gma09g00890 363 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Gma09g00890 363 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Gma09g00890 363 Pfam KNOX2 domain 152 202 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00890 Gma-Chr9 14034764 14047741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00890 94 357 Homeobox Transcription Factor Family AT5G25220 83.835 1.82e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma09g00890 KNOX2 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00890 - - gmx:100803034 700.664