Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00878 ATGGTTCTTTCGTGGCCTTGCATTAACTCGCTATTCATAATTTGCTTTTTAAATTTTGGCTTACAGACAGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGGAAGGGAAAGAGGCCTGGGAAAGGTGGGAATCGCTTTTGGAAGTCAATTGGGCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATTCGGGGTCGTATCCTAGCCGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTGAGGAGGAATTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTTCACACATATCACCTTGTTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCAATCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATCCCCGCTGGATCCTCTAGCGGTGCAAAGAAGGCTTTTACTGGAATGTGA 534 0.4251 MVLSWPCINSLFIICFLNFGLQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPSHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGAKKAFTGM 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00878 177 ProSitePatterns Ribosomal protein S17 signature. 139 151 IPR019979 GO:0003735|GO:0005840|GO:0006412
Gma09g00878 177 Gene3D - 9 176 - -
Gma09g00878 177 Pfam Ribosomal_S17 N-terminal 22 90 IPR032440 -
Gma09g00878 177 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 21 177 - -
Gma09g00878 177 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 21 177 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gma09g00878 177 TIGRFAM uS17_arch: ribosomal protein uS17 73 161 IPR028333 -
Gma09g00878 177 SUPERFAMILY Nucleic acid-binding proteins 86 165 IPR012340 -
Gma09g00878 177 PRINTS Ribosomal protein S17 family signature 106 129 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gma09g00878 177 PRINTS Ribosomal protein S17 family signature 139 149 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gma09g00878 177 PRINTS Ribosomal protein S17 family signature 149 156 IPR000266 GO:0003735|GO:0005840|GO:0006412
Gma09g00878 177 Pfam Ribosomal protein S17 92 160 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00878 Gma-Chr9 13401554 13403711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00878 22 177 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.821 1.72e-92 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00878 K02949 - gmx:100500186 313.153