Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00826 ATGAGGCAGTCTTTTGATCCTTCATCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAAGCAGGGAATGGTGCATGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCGTCGGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAACTTGAATGAAACTGCAAATGCTTATCAATCTATTGACGACATCTCATCCGGCTTTAAGAAGCTCCATCAAGATGCTGAGGGCAATGGTTCACTTGAAGACGGTGATACTCATGCAATTGGACCTGCCCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACTTAAGTGGTTTGCCTGGTTCTCTTGAGGACTTAGAAGAGTATGATCTTTTTGGTTGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAAGTCTCACTGTGGGTATATCTAAGCTAAGCTTTGCAGATAGTACCGTTGGCAGTGTTTTGCCCCCTTATTCTTTTCCCAATGGTGTGGGAGCTGTTGCGGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGGAATATTAACAGTAATGTGGAGGATTCAGAGCTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTATACACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTTCATTACAGAACAAACCTCTACGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAGGACAATCCATCAGACAAGGATATCAACCAGGGAACATTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTGCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTCTATGATGTCAGAGCAGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGACCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGAAGAATCTCGGAGTTTCCGATACCAAGTGAGTTCACCTGTAGCTAACTCTCCCCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATAAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCTAACGCTGTAAAGGCTGCTGCTATTGGCAATGACTTGGGAAGGAGCAGTCAAGGAGAGCACATATTTTCCGGTATGAATTCATCACACGGAGCTACTTTTCAGTCGCATTCACTTCCAGAGCCTAAATTCAGCCAATATCGTGGAGCATTGTCCTCAATTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCTGGGCCACAGTTTCTATGGGGAAGCCCAACTCTCTACTCAGAGCATACCAAACCTTCAGTTTGGCCAAGATCATCTGTGGGGCATCCGTTTGCTGCATCCAATGGAAAGAGCCATGCCTTCCCATATTCAACTCAGAATAGTTCTTTTGTTGGTTCATCCCAGCATCATCACCACCATCATGTCGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCTGAGTCATCTGAAACTTCATTCATGAATAATGTTGGCTATGGAGGCATTGGTCTTGGGCATAATGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATCCTAACACTACTATCCCAAGAAATATATCTGATAATGGTTCATCAAACTTAAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTCTTTTTGGGAAATGGTCCTTATCCAGGACTGCCACCTACCACTTTGGAGAGTTTGGCTGACCGTGCTCGGAGTAGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAGCAATTTCAGCTCGATTTGGATAAGATTAGAAGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCACCCTTTCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCATCTTTGGCATATGCTCGAATTCAAGGAAAATCTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAACGATGTCGCCCTATTCTCTTCCACTCAGAGGGTTCTGAAGTTGGTGATCTGATTGTACAAGAGCACCTTTCTTCCAACTCCAACAATCTAAACATTCAGGCACCTAGGCCAAGTGAATTCTATTCAAGTGATTTTGCTGGGAGTCCTCCAAAGGCGGGCCCTTCTGCAAGCTTGGATACAAATTAA 2589 0.4233 MRQSFDPSSLGPSKIPSIKIPGKAGNGAWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETANAYQSIDDISSGFKKLHQDAEGNGSLEDGDTHAIGPALPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGCGGGMELETDPQESLTVGISKLSFADSTVGSVLPPYSFPNGVGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQEESRSFRYQVSSPVANSPPGNWLQFNSPVEQNSMQTINHSPGSRIISPTTGNHLPGLASILQPQVSNAVKAAAIGNDLGRSSQGEHIFSGMNSSHGATFQSHSLPEPKFSQYRGALSSIGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSVWPRSSVGHPFAASNGKSHAFPYSTQNSSFVGSSQHHHHHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGIGLGHNDGNYMVNVGGSVNPNTTIPRNISDNGSSNLRMRSSPRLSPVFLGNGPYPGLPPTTLESLADRARSRWIENNGSQVDSKKQFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGAYDFLYLPIDFKNKCNVGYAFINMLSPFLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEVGDLIVQEHLSSNSNNLNIQAPRPSEFYSSDFAGSPPKAGPSASLDTN 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00826 862 Gene3D - 279 376 IPR012677 -
Gma09g00826 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Gma09g00826 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Gma09g00826 862 SMART rrm1_1 280 348 IPR000504 GO:0003723
Gma09g00826 862 SMART rrm1_1 195 263 IPR000504 GO:0003723
Gma09g00826 862 MobiDBLite consensus disorder prediction 1 23 - -
Gma09g00826 862 CDD RRM2_MEI2_like 278 348 - -
Gma09g00826 862 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 853 - -
Gma09g00826 862 Gene3D - 183 278 IPR012677 -
Gma09g00826 862 SUPERFAMILY RNA-binding domain, RBD 698 782 IPR035979 GO:0003676
Gma09g00826 862 Pfam RNA recognition motif 2 696 792 IPR007201 -
Gma09g00826 862 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Gma09g00826 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Gma09g00826 862 MobiDBLite consensus disorder prediction 835 862 - -
Gma09g00826 862 CDD RRM3_MEI2_like 699 784 IPR034454 -
Gma09g00826 862 PANTHER PROTEIN MEI2-LIKE 2 3 853 - -
Gma09g00826 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Gma09g00826 862 CDD RRM1_MEI2_like 193 269 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00826 Gma-Chr9 11897681 11903870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00826 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 3.45e-07 52.0