Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00683 ATGTTGAACCCCGAACCGCCGCCGCCGCCGATGATGGTTCCGCCGGCGACACCGATGAACCGCGAAACGACGTCGCTAAGGAAGAAGAACAGACTCCGAACTCGAACTCGAATTCCACCTTTCGACGTGGACTCCTCCTTCTTCACCACGCCGATCTCCTTGCAAGGCACCACAAAATCAAACGCGATCTCCGTGGAGCAATACGACGGCGTTTCCGCTTCCGCTTCCAGCCCCGTCCACGTCATCAACCTCTCTGATACCGAGGACGACGACGAAGTCCGAATCCTCAACTTCACTCCCATAAACACGTCCTTCGGAAAACGCAGCAAGAAATCATCATCCAAAGGAGAGTGCTCCAACTCCGCATCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCCAGAGACTCCTTCTCGATCATCGGATGCCACCACGTGTACTGCAACTCCTGCGTGGCGCAGTACGTCGAATCGAAGCTCGAAGAGAACATCGTTAGCATCCCCTGCCCCGTGCCGGGATGCAGGGGACTACTGGAGGCTGATGATTGCCGTGAAATTCTCGCGCCTCGCGTCTTCGATCGGTGGGGAAAAGCCTTATGCGAGGCTGTGATTGCTGCTGAAGAAAAATTCTATTGTCCCTTTGCGGATTGTTCTGTTATGTTGATTAGAGGGATCGAGGAAAACAATATCAGAGAAGCTGAGTGTCCTAACTGTAGGAGGCTTTTCTGTGCGCAGTGTAGGGTGCCCTGGCACGATAATATGCCCTGCGAGGACTTTCAGAAGCTGAACGCGGACGAGAGGGATAAGGAGGATATCATGCTGATGAACCTCGCCAATCAAATGCAGTGGAAGAGGTGCCCCCGGTGTAGGTTCTACGTCGCCAAATCGGATGGATGCATGTACATGAAATGCAGGTGTGGAAACGCCTTCTGTTACAACTGTGGAGCTCCCAACTTAACCAGCTCCCATAGTTGCAGCTATTGTTTTCGTTAA 996 0.5301 MLNPEPPPPPMMVPPATPMNRETTSLRKKNRLRTRTRIPPFDVDSSFFTTPISLQGTTKSNAISVEQYDGVSASASSPVHVINLSDTEDDDEVRILNFTPINTSFGKRSKKSSSKGECSNSASFVCEICTETKTARDSFSIIGCHHVYCNSCVAQYVESKLEENIVSIPCPVPGCRGLLEADDCREILAPRVFDRWGKALCEAVIAAEEKFYCPFADCSVMLIRGIEENNIREAECPNCRRLFCAQCRVPWHDNMPCEDFQKLNADERDKEDIMLMNLANQMQWKRCPRCRFYVAKSDGCMYMKCRCGNAFCYNCGAPNLTSSHSCSYCFR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00683 331 Gene3D - 254 331 - -
Gma09g00683 331 SUPERFAMILY RING/U-box 122 203 - -
Gma09g00683 331 MobiDBLite consensus disorder prediction 1 16 - -
Gma09g00683 331 Pfam IBR domain, a half RING-finger domain 278 319 IPR002867 -
Gma09g00683 331 Pfam IBR domain, a half RING-finger domain 202 257 IPR002867 -
Gma09g00683 331 MobiDBLite consensus disorder prediction 1 24 - -
Gma09g00683 331 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 329 IPR031127 GO:0004842|GO:0016567
Gma09g00683 331 ProSiteProfiles TRIAD supradomain profile. 122 331 IPR044066 -
Gma09g00683 331 SUPERFAMILY RING/U-box 268 328 - -
Gma09g00683 331 SMART ibrneu5 267 329 IPR002867 -
Gma09g00683 331 SMART ibrneu5 194 257 IPR002867 -
Gma09g00683 331 ProSitePatterns Zinc finger RING-type signature. 144 153 IPR017907 -
Gma09g00683 331 ProSiteProfiles Zinc finger RING-type profile. 126 172 IPR001841 -
Gma09g00683 331 Pfam Zinc finger, C3HC4 type (RING finger) 126 171 IPR018957 GO:0046872
Gma09g00683 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 207 IPR013083 -
Gma09g00683 331 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 329 - -
Gma09g00683 331 SUPERFAMILY RING/U-box 200 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00683 Gma-Chr9 8089678 8092305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00683 126 318 C3H Transcription Factor Family AT2G19610 31.188 3.90e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00683 K11975 - gmx:100807821 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00683 09 8089678 8092305 Gma09g00683 09 8089678 8092305 ECH
Gma15g01712 15 18448291 18450867 Gma09g00683 09 8089678 8092305 GST