Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00660 ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCACTGGTTTCTTTACCTCCTGTTGGAAGTGTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCTGCATCCATGCAAAAGGAGGCTGACTTCATACCTAGTTATCCTAACCTTCCATCCAAATTGATTTGCATGCTTCACAATGTTGCCTTGCACGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACACTTCAACCTGTAAATAAATATGACAAGGAAGCACTATTGGCATCAGACATGGGTCTCAAACAAAACCAACAACCTACCGAGTTCTTTTGCAAAACACTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCGGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGAGGACAACCGAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCAGTTCTTTTTATCAGAGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGGGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCAGCTTCAAATAACAGCCCGTTTACTATATTTTATAATCCAAGGGCCAGCCCTTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAGGCCCTGTTCAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAATCAGGGGTACGCAGATATATGGGTACAATCACTGGTATCACTGACTTGGATCCTGTCCGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGACTGCCGGTGAGCGCCCGAGCAGGGTTTCTATTTGGGATATTGAGCCAGTGGTGACTCCTTTCTATATTTGTCCTCCTCCATTTTTTAGGCCTAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCAATGCCCTGGCTTGGAGACGACCTTGGCATGAAGGATGCCTCAAGTTCAGTCTTCCCTGGTTTTAGTTTGATGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAATCTGGATTTATACCCCCATCCATGCTTTCATCCAATGCACTGCATGGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTTCAAGCTCCTGTCCTCTCTTCACCAAATCTTCAATTTAACAAACCTAATTTAGCAAACCAAGTCAACCAATTGCAACAATCCCCAACGTCATGGTCTCCGCAGCAGCAGCAGCAGCAACAACAGCAGAAGCTGCAGTCAATGTTGCAAACACCCTTAAATCCGCTCCAGCAACAGAGGCAACAACAGCTGCCCGTACCACAAAACCTGCCACAACCACAGCAACAACAACCCCAAATGCCTCAACAGAGAGCGCAACAGCCACAAGAACAGCAACAGCAGTCGTGTCAACAGACCATCATGAATAACGGGGCAGTTGCTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGTATCATACTCACAACTTCAGCAACAGCAATTAATCTCAGGAAGTATCCCACCCCAACAATGTTTTCCATCGCCCAATAAGAATACATTGCTGATGACATCCTTACCACAAGACTCACAGTTTCAGCAACAAATAGATCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCTGCAGCAGCAGCAGCAACAGACACAGTTGCAATCATCTCCGTTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCACCACAGCAACCACAAATGACTCAAATGTCACAGCAAAACAGCTCAGACCAACAACCACAGTTACAGATGCTACAGAAATTGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGAAACCCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAGCAAAATACTCATCAACAAAACCAGCAATTTCCGCAGCTGCCTCTATCACAGGGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTCTCAATGGCAACAACTACTCTTCTTCATCTCTGATGCAAACACAGCAGCTTTCGGTGAACCAACCCCATAATACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACTCTTACAGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCCGAATCTGATGAAAAGAAATCAACAAGTATCAGCCACATTAGGAGGACCTTCGGTAGTTGAACCCACCAATCATCTGATGCAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACATGAATTGCCCAGTGTAAGAGGAACTGATCAGCTGAAGTTCAAAGGGACTGTTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATTTTCCATTTGCCTCTAATCTCGATGGATTAACACCTGATACTTTGCTCTCAAGAGGCTATGATTCTCAGAAAGATTTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCCTTAGTCCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCAAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGGATGTTTGGAATTGAAGGACAGCTAGAAGATCCTCAAAGGACCGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTTCTGAGGTACAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCTGTCCCAAATCAAGCTTGTAGTGGAACAGATAATGGCAATGCGTGGAGGGGACAGTATGATGATAATTCTGCAGCCTCATTTAATCGATAA 3378 0.444 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSVVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEALLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQVSLGMRFRMMFETEESGVRRYMGTITGITDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSVFPGFSLMQWMSMQQNNQFSAAQSGFIPPSMLSSNALHGNLTTDDPSKLLSFQAPVLSSPNLQFNKPNLANQVNQLQQSPTSWSPQQQQQQQQQKLQSMLQTPLNPLQQQRQQQLPVPQNLPQPQQQQPQMPQQRAQQPQEQQQQSCQQTIMNNGAVASNQIPNQCVQQPVSYSQLQQQQLISGSIPPQQCFPSPNKNTLLMTSLPQDSQFQQQIDQQASLLQRQQLQQQQQQTQLQSSPLQLLQQSLSQRAPQQPQMTQMSQQNSSDQQPQLQMLQKLQQQQQQQQQQQQQKPLSTSSPLLQSQLLQQQNTHQQNQQFPQLPLSQGHQPQQLGNNAFSMEKLLNGNNYSSSSLMQTQQLSVNQPHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPNLMKRNQQVSATLGGPSVVEPTNHLMQELHSKSEMQIKHELPSVRGTDQLKFKGTVADQMEASSGTSYCIDPNNIHQNFPLPNFCMDGDVQSHPRNNFPFASNLDGLTPDTLLSRGYDSQKDFQNLLSNYGGAPRDIETELSTAALSPQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSSEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00660 1125 Gene3D - 289 360 - -
Gma09g00660 1125 PANTHER AUXIN RESPONSE FACTOR 19 1 1113 - -
Gma09g00660 1125 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gma09g00660 1125 MobiDBLite consensus disorder prediction 768 811 - -
Gma09g00660 1125 CDD B3_DNA 125 217 IPR003340 GO:0003677
Gma09g00660 1125 SUPERFAMILY CAD & PB1 domains 1012 1076 - -
Gma09g00660 1125 Pfam AUX/IAA family 995 1085 IPR033389 -
Gma09g00660 1125 Gene3D - 123 227 IPR015300 -
Gma09g00660 1125 MobiDBLite consensus disorder prediction 1103 1125 - -
Gma09g00660 1125 SMART B3_2 126 228 IPR003340 GO:0003677
Gma09g00660 1125 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gma09g00660 1125 ProSiteProfiles PB1 domain profile. 998 1091 IPR000270 GO:0005515
Gma09g00660 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1113 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma09g00660 1125 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gma09g00660 1125 MobiDBLite consensus disorder prediction 656 742 - -
Gma09g00660 1125 MobiDBLite consensus disorder prediction 484 557 - -
Gma09g00660 1125 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma09g00660 1125 Gene3D - 993 1087 - -
Gma09g00660 1125 Coils Coil 682 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00660 Gma-Chr9 7621370 7629225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00660 1 488 B3 DNA Binding Superfamily AT1G19220 82.992 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma09g00660 AUX_IAA 4.6e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00660 K14486 - gmx:100804628 1853.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00660 09 7621370 7629225 Gma09g00660 09 7621370 7629225 ECH
Gma15g01689 15 17748841 17757950 Gma09g00660 09 7621370 7629225 GST
Gma17g00443 17 3623651 3629621 Gma09g00660 09 7621370 7629225 PCT
Gma13g00926 13 23397235 23403638 Gma09g00660 09 7621370 7629225 PCT
Gma09g00660 09 7621370 7629225 Gma17g00443 17 3623651 3629621 PCT
Gma09g00660 09 7621370 7629225 Gma13g00926 13 23397235 23403638 PCT