Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00646 ATGGCATTTGAGTCCAACGAAGTTGCAGCCACAACGCTCCAAGCCATATGCTACAAGCGCGGTTCCCTCCAGCTTCTCGATCAGAGAAAGCTCCCTCTGGAGACAGTTTACTTGGAAATTCGGGATTCAACGGATGGCTGGAATGCCATACGGGAAATGGTGGTCCGGGGAGCACCTGCTATTGCAATTGCAGCGGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGATTTTAATGGGTCAGCTACTGATGCTGTATCCTTGCTGCAGAAGAAATTAGAATATCTTGTCACAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGCGACAAAACTCAAAGAAGTGATATCAAATGCTGCTGCTACCACTTCAGAGGGAAGGAGTGTTTTCCAAGTGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCGTCAAATAGAGCTATTGGTTCTTATGGAGCTAGTATTATTCAACAACAAACAGAGAAACAAAAGCTTTCTGTTTTGACTCATTGCAACACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACTCTTATTGCCGATTCTGCTGCAGCTGCATTAATGAAGGCAGGACATGTGGATGCTGTTGTTGTTGGGGCAGATCGGGTTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGCGTTGCCTTGTCCGCTAAGTTTCATAATGTACCTTTTTATGTGGCTGCACCCCTAACTTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGGTCTCCCAAGGAATTGCTGAACACACATGGAGGACTTGGAGAGCAGATTGCTGCCTCAGGAATTTCTGTGTGGAACCCAGCTTTTGATGTTACTCCTGCTAATCTAATATCGGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGCTGGTGATGCATTTGACATCAAAGCCTTCGTACAGAAAACAGCGATTCACGAAACCCTTCGATCAAAGGTTGGAATCGAAATGCAGAAGTCGGCATTGCCACTGAGCGACGCGAATGCGAACAAGAAGAGGGAGGAATTGCGCCGCAAGGAAACGTTGGTGAAGCTTCTGAGATGGCATTTTGGGTACCCCGATTTCAGGGACATGCAATTGGACGCTATTCAAGCTGTGCTCTCAGGGAAAGATTGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCCTTTAATAGGTGAATCACATTCTTCTTTTATAAATTTTGAAAACCAAGTAATGGCACTAAAGGAGAAAGGCATAGCGGCAGAATTTCTCTCCTCAACGAAAACAACAGATGCAAAAGTAAAGATTCATGAGGACCTTGATTCTGGAAAACCTTCTACGAGGCTGCTATATGTGACTCCAGAGTTGATAACAACACCAGGGTTTATGACTAAGCTGACAAAGATTTATACCAGGGGGTTGCTAAATCTGATTGCGATAGATGAGGCGCATTGCATCTCATCTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTATCCTCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGTGCCTAAGGTTCAGAAGGATGTAGTTGAATCCTTGCAGATGCAAAATCCATTAATGCTCAAGTCTTCATTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTGTTGGATGATGCTTATGCTGATTTATCTAATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAACTAATCTATCCCAAAATGGCATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTGGATGATTGGATATCTTCCAAGATAAAAGTTGTTGTTGCTACTGTTGCTTTTGGGTATGCTTTCCCCTTTTTATACCAAATTAACCAGGGCATTGATAGAAAGGATGTCAGAATTGTATGCCACTTCAACATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGCTGTACTATGGGGTAGATGATCGCAAAAGAATGGTTGGCTTACTTGATACTTTGCTCTTGTTTTTCTTATTAGACTTGTTTTCTCATTGCAATCTGTGTCAGGAATTTATATTACGTAAATCAGTGAGCAAGAAGTCACAGTCATCTAGTTCACAAGAAGAATCATCCAAAATGTCCCTGATTGCTTTCAATCTGATGGTTGAATATTGTGAAGGGTCTGGATGTCGCAGGAAAAGGGTTCTCGAGAGTTTTGGGGAACAGGTAACTGCATCACTATGTGGAAAAACATGTGATGGCTGCAGACATCCAAACTTAGTTGCCCGATATTTGGAGGATCTCACAACTGCTTGTGCTCTACGCCAGAAAAATGGTTCTTCTCGAGTTTTTATGACCAGTTCCACTGATGCAATTAACGGAGAACAGTTATCTGAATTCTGGAATCAGGATGAGGAAGCTAGTGGATCAGAGGAAGATATATCTGATTCAGATGATGGTAATGAGGTTGTCAACAACCTAACCCGGTCAAAGCTTCAATCCAAATTGGGAGTGAGTGAAAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATCGAAATAATAATGCTTACAAACAGAGCAACAAAGTTGACAAAAATGCTATTTCTGATCCAATGCGAGGATCAAGCAGGCAAAGGTTACAAAATGCTCTAAAACAGGTTCAGCAACGGCTTGACAACTTCAAGATTGAAATGGAAACATCAGCATCTTTCCTTGAAGAAGAATGCTACAAGAAATATGGCAAGGTTGGTAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACAACTGCAAGTTCTAGCGAACTGATCAACCGACTTAGTGCAATTAATGCTTCTACCTCAATGAATGTCTTGTCTGAAGCTGAAAACCTCCTCATCccagctaatcagcccctcacaccagctgaacagcccctcacaTCGCCACCTGCTTTAGATCCTTATGCAAGAGATACCAGCAATGAACACTCAGGCACTGCTAGATCAGAAACTTCTGCATGTGTCTTGCCAATGGAAGGTTCTTTTAGTACCAATTTGCCACAGATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAGCAAAAGGGGACCAATTACATGACACCAAAAGGCATTCATCAAGAGTTGAAAAGAAGATGAGGATACAGTAG 3486 0.4188 MAFESNEVAATTLQAICYKRGSLQLLDQRKLPLETVYLEIRDSTDGWNAIREMVVRGAPAIAIAAALSLAVEVFNLDFNGSATDAVSLLQKKLEYLVTSRPTAVNLSDAATKLKEVISNAAATTSEGRSVFQVYIDAAEVMLEDDVASNRAIGSYGASIIQQQTEKQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLKRAYCTETRPFNQGSRLTAFELVHEKIPGTLIADSAAAALMKAGHVDAVVVGADRVASNGDTANKIGTYSVALSAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNTHGGLGEQIAASGISVWNPAFDVTPANLISGIITEKGVITKTSAGDAFDIKAFVQKTAIHETLRSKVGIEMQKSALPLSDANANKKREELRRKETLVKLLRWHFGYPDFRDMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKAGIVLVVCPLIGESHSSFINFENQVMALKEKGIAAEFLSSTKTTDAKVKIHEDLDSGKPSTRLLYVTPELITTPGFMTKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLMLKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSTNLSQNGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGYAFPFLYQINQGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGVDDRKRMVGLLDTLLLFFLLDLFSHCNLCQEFILRKSVSKKSQSSSSQEESSKMSLIAFNLMVEYCEGSGCRRKRVLESFGEQVTASLCGKTCDGCRHPNLVARYLEDLTTACALRQKNGSSRVFMTSSTDAINGEQLSEFWNQDEEASGSEEDISDSDDGNEVVNNLTRSKLQSKLGVSEKLAMLQRAEENFYRNNNAYKQSNKVDKNAISDPMRGSSRQRLQNALKQVQQRLDNFKIEMETSASFLEEECYKKYGKVGKSFYYSQVASTVRWLTTASSSELINRLSAINASTSMNVLSEAENLLIPANQPLTPAEQPLTSPPALDPYARDTSNEHSGTARSETSACVLPMEGSFSTNLPQIPSFSEFVNSRKAKGDQLHDTKRHSSRVEKKMRIQ 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00646 1161 Gene3D - 203 367 IPR042529 -
Gma09g00646 1161 Gene3D - 383 619 IPR027417 -
Gma09g00646 1161 MobiDBLite consensus disorder prediction 908 927 - -
Gma09g00646 1161 Gene3D - 620 879 IPR027417 -
Gma09g00646 1161 Pfam Helicase conserved C-terminal domain 644 752 IPR001650 -
Gma09g00646 1161 Coils Coil 984 1004 - -
Gma09g00646 1161 CDD DEXHc_RecQ 412 619 - -
Gma09g00646 1161 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 387 1145 - -
Gma09g00646 1161 SUPERFAMILY NagB/RpiA/CoA transferase-like 10 357 IPR037171 -
Gma09g00646 1161 MobiDBLite consensus disorder prediction 1076 1109 - -
Gma09g00646 1161 MobiDBLite consensus disorder prediction 1138 1161 - -
Gma09g00646 1161 MobiDBLite consensus disorder prediction 910 924 - -
Gma09g00646 1161 Gene3D - 11 202 IPR027363 -
Gma09g00646 1161 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 431 612 IPR014001 -
Gma09g00646 1161 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 413 772 IPR004589 GO:0004386|GO:0006310
Gma09g00646 1161 Pfam DEAD/DEAH box helicase 425 599 IPR011545 GO:0003676|GO:0005524
Gma09g00646 1161 SMART ultradead3 419 628 IPR014001 -
Gma09g00646 1161 Pfam Initiation factor 2 subunit family 55 354 IPR000649 GO:0044237
Gma09g00646 1161 MobiDBLite consensus disorder prediction 1133 1161 - -
Gma09g00646 1161 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 643 798 IPR001650 -
Gma09g00646 1161 CDD SF2_C_RecQ 620 763 - -
Gma09g00646 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 766 IPR027417 -
Gma09g00646 1161 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 41 355 IPR011559 GO:0044249
Gma09g00646 1161 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 14 355 IPR005251 -
Gma09g00646 1161 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 13 364 IPR005251 -
Gma09g00646 1161 Pfam RecQ zinc-binding 805 861 IPR032284 -
Gma09g00646 1161 SMART helicmild6 663 754 IPR001650 -
Gma09g00646 1161 PANTHER DNA HELICASE RECQ FAMILY MEMBER 387 1145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00646 Gma-Chr9 7340073 7361548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00646 52 370 Eukaryotic Initiation Factors Gene Family AT2G05830 77.570 9.62e-161 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00646 - K10901 gmx:100819601 1376.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00646 09 7340073 7361548 Gma09g00646 09 7340073 7361548 ECH
Gma15g01667 15 17309071 17310740 Gma09g00646 09 7340073 7361548 GST