Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00616 ATGCTAAAGAATGAAAGCATGTTGCTGGTTGAATCTTACATCTTCAACTTTAGGACTAGTAATAGTTCTGCTGCCCAAAATGCAAGTCATAATAACACACAGAATTTCAGGCCAACAATTCAACCACCATACCAACCGCCTCCACTTTACAAAGGCTGTGGGCCAGTGGTGAAAAATGAGGTGCCAGCACGCATCGTTCCTAAAGCTGCTTTAAATCCTTATCAATGTCGGTGGGCTATCAAAGCAAGGGTAACTGCTAAAGTGGATCTGCGTCGCTATAATAATGCTCGTGGTGATGGGAACGTCTTCTTATTTGATCTGCTTGAttctgatggagtAACATGCTTTAATGCTGCTGTTGATCACTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTGTTGGAATCAACTTCAACAGTTGAGCTCTGCCCAGATGAGGATGTGACATCTGTGAATCCTTCAGTTCCTATCTTGAGGAAGAATGGAGTGGAAACCCAGAGAAGAATTTTGAGTCTGAAGGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGCGAATTCTGCAACAGGGAAGGACAACAGCTGCAAGAGATGGTGGATACTGGATCTTTCCCAATTTTAGCAGTCAAAGCTGGGAAGGTGAATGATTTTAGTGGAAAGTCAATAGGTTCTATTTCTACCACGCAGCTTTTCATAAATCCTGATTTTCCTGAGGCTCATAGCCTAAGAGAATGGTTTGATCGGGTAGGAAAAGATTCTGCCTCCCTATCAATTTCTAAGGACATTATTCCTGGAGCAGTGAAGAATAAGGTACGCAAAACTGTGTCTCGAATGAAGGATGAAGGTCTAGGGCGGTCAGACAAGCCAGACTGGATCATTGTAAGGGCTGCTATATTATTCATCAAAACAGATACATTTTGTTGCACAGCTTGCCCTCTGATGATTGGAGATCGCCGGTGCAATAAGAAAGTGACTAGGTCAGGAAACACTAGGTGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGGGGAAGAGATTATGGAGTACTCAGCAAAGGATCTGTACTTTTTGA 1149 0.4186 MLKNESMLLVESYIFNFRTSNSSAAQNASHNNTQNFRPTIQPPYQPPPLYKGCGPVVKNEVPARIVPKAALNPYQCRWAIKARVTAKVDLRRYNNARGDGNVFLFDLLDSDGVTCFNAAVDHFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESTSTVELCPDEDVTSVNPSVPILRKNGVETQRRILSLKDSSGRSVELTLWGEFCNREGQQLQEMVDTGSFPILAVKAGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFDRVGKDSASLSISKDIIPGAVKNKVRKTVSRMKDEGLGRSDKPDWIIVRAAILFIKTDTFCCTACPLMIGDRRCNKKVTRSGNTRWQCDRCNQEFEEGKRLWSTQQRICTF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00616 382 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 46 171 - -
Gma09g00616 382 Gene3D - 288 379 IPR012340 -
Gma09g00616 382 Pfam Replication factor-A C terminal domain 316 368 IPR013955 -
Gma09g00616 382 SUPERFAMILY Nucleic acid-binding proteins 172 274 IPR012340 -
Gma09g00616 382 CDD RPA1_DBD_C 304 368 IPR013955 -
Gma09g00616 382 CDD RPA1_DBD_A 67 166 - -
Gma09g00616 382 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 172 370 - -
Gma09g00616 382 CDD RPA1_DBD_B 172 272 - -
Gma09g00616 382 PANTHER REPLICATION FACTOR A 1, RFA1 46 171 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma09g00616 382 PANTHER REPLICATION FACTOR A 1, RFA1 172 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma09g00616 382 Gene3D - 171 281 IPR012340 -
Gma09g00616 382 SUPERFAMILY Nucleic acid-binding proteins 297 373 IPR012340 -
Gma09g00616 382 Gene3D - 64 170 IPR012340 -
Gma09g00616 382 SUPERFAMILY Nucleic acid-binding proteins 70 170 IPR012340 -
Gma09g00616 382 Pfam Replication protein A OB domain 172 258 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00616 Gma-Chr9 6927501 6928955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00616 31 379 Core DNA Replication Machinery Family AT2G06510 67.969 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00616 K07466 - gmx:100792409 615.92