Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00582 ATGCACCCCATGGAAAGCGTCTTCTCTCTCTCTGTGGCCGCAAGGGCTGATTTTATCCAATTTCTGGTGCAGTCTTTTGGCTGCAGTTACATTTGTCTATGGGCATATGATTCCATTTCACCAAATCGTTTGAGCTTCTTGGATGGTATCTACAATCTAAGGAACAACCAAGCAAGTTCAAGTTTGGGGAGTGTGCAGGCACAACAGCTTTTCAGTCAGTTCCGGACTTTGACATTTGATATCAATGATGACCGTGTTCCTGGACTAGCTTTTCGGAATCAACGGTCATACCTTGAGCTCCAACAATTGGAACTTCTCAGACTAGCATCCACAGAAATACAAACACAATTTTTTCAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAACACTTAGGAGTTTGTTTCCTGAAGATTTTTCCACTAGAGTACTGTCCCAGCAAATTGATCAAAACCCTCCAGCATCATCTTCATCTTCTCTGAGATCAATCTCCACAGGAAGCCCTGAATACTCATCACTTCTATTCAGTATTCCAGGAACTTCTCAACCCCACTTTTCACCTGAGACACTTGGAGCATCATCATCATCAAGACTAGTGCCACCAATGCAGCCAGTGCCAAATAGTCCTCACCAACAAGCCATTAATAATATTCAAGCATTGGCACAAGTCCCTTCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAGAGCAATCCTCTATGTTATATCTCCAACAACTTCTCATCATCATCATAATCAACAGCACCAACAAAACTTGCCTTATAGTAGTAATAATTCTCTTCCTGTGGTGCATCCTGATGCTAGTGCATTCCAGAGGTATAGACAAGACTTAGGCTCCAACAACATGGTCTCCAATATTCTCAGAAGGCAAAGCCTCATGAAGAGATCTTTTGTGTTCTTTAGAAACTTGAATTTTATGAGAATGAGAGATCGCATTCAAGCAACGTCTCGTCCCACCAATACTCAGCTTCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAGCTAAACGAGAATTTTCAATCCCTTAGAGCACTTCTTCCTCCGGGAACAAAGAAAGACAAAGCGTCTATACTGATAGCAGCAAAGGAGACATTGAGCTCTTTGATGGCTGAAGTTGATAAACTGAGCAAAAGGAATCAAGGGTTGACGTCATTTTTGTCAGCCAAAGAATCTACAACTGAAGAAACCAAGGTAGCTAGTTTATCGCCAAATAAAAGATTAAGTGTCATAATTTCACATGTACCCGAATCAAGCTCATCAGAAGAGAGAATGGTGGAGTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAACTGATTTATTAATCCGGTTATTGGAATTCTTAAAACTGGCTCACCACGTGAGCTTGGTTTCCATGGACGCAAACACCCACGTTGCAGAAGGGAATAATGCACTACATCAACTATCCTTCAGATTCAGGATTATTCAGGGAAGTGAATGGGACGAGTCTTCCTTCGAGGAAGCAGTGAGAAGAGTAGTTGCTGACTTGCTACAGTACCAAATGGACCAATAA 1620 0.4167 MHPMESVFSLSVAARADFIQFLVQSFGCSYICLWAYDSISPNRLSFLDGIYNLRNNQASSSLGSVQAQQLFSQFRTLTFDINDDRVPGLAFRNQRSYLELQQLELLRLASTEIQTQFFQTAVFMGCNKGEIELGFLNMSQVDIQTTLRSLFPEDFSTRVLSQQIDQNPPASSSSSLRSISTGSPEYSSLLFSIPGTSQPHFSPETLGASSSSRLVPPMQPVPNSPHQQAINNIQALAQVPSLTQFPTPETEHDAIMRAILYVISPTTSHHHHNQQHQQNLPYSSNNSLPVVHPDASAFQRYRQDLGSNNMVSNILRRQSLMKRSFVFFRNLNFMRMRDRIQATSRPTNTQLHHMISERRRREKLNENFQSLRALLPPGTKKDKASILIAAKETLSSLMAEVDKLSKRNQGLTSFLSAKESTTEETKVASLSPNKRLSVIISHVPESSSSEERMVELQVNVRGQVSQTDLLIRLLEFLKLAHHVSLVSMDANTHVAEGNNALHQLSFRFRIIQGSEWDESSFEEAVRRVVADLLQYQMDQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00582 539 MobiDBLite consensus disorder prediction 200 223 - -
Gma09g00582 539 Pfam Helix-loop-helix DNA-binding domain 352 397 IPR011598 GO:0046983
Gma09g00582 539 Gene3D - 347 423 IPR036638 GO:0046983
Gma09g00582 539 Coils Coil 387 407 - -
Gma09g00582 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 412 IPR036638 GO:0046983
Gma09g00582 539 CDD bHLH_AtbHLH_like 353 405 IPR045239 -
Gma09g00582 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Gma09g00582 539 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 532 IPR044658 -
Gma09g00582 539 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 532 - -
Gma09g00582 539 SMART finulus 354 403 IPR011598 GO:0046983
Gma09g00582 539 MobiDBLite consensus disorder prediction 200 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00582 Gma-Chr9 6352660 6357432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00582 15 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.241 2.43e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g00582 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00582 - - gmx:100798452 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00582 09 6352660 6357432 Gma09g00582 09 6352660 6357432 ECH
Gma15g01595 15 15661815 15667235 Gma09g00582 09 6352660 6357432 GST
Gma17g00510 17 4194557 4197880 Gma09g00582 09 6352660 6357432 PCT
Gma13g00853 13 22781926 22788734 Gma09g00582 09 6352660 6357432 PCT
Gma09g00582 09 6352660 6357432 Gma17g00510 17 4194557 4197880 PCT
Gma09g00582 09 6352660 6357432 Gma13g00853 13 22781926 22788734 PCT