Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00570 ATGATACCAACTTATCGTTACTCAGTGTCTTCGCCTATGCCTATAGATCTTAATGAAGATCACACCCACCACGTCTTCAGTACAAGCCATCAAGCCTCTTCTTCGTCTTCTTCTCTATCTTTTTCTATTCTCTTCAACCCGGATCATCAAGGTCAAGGAGGATCTTGTTGCCACTGGGAATCAAAGCACTTACAAAGTGATGAAGAGGCCCAGAAGATTGTTCCTTCTAGTGAATCATGGGAGCATCCAGTATCTGAAAAGGATGAAAACAGAAGTGATCTCAAGCTGAGAGTTTGGAAGAAAGAAGATAAGTGTGAAAATTTTCAAGTTGAAGATAATTCAACTAAGTGGATGCCTTTAAAGATGAGAATGATGCGGAGGATGATGGTGTCAGATCAAACGGGTTTTGATACAGAAGGCATGATCTCTAACTCTAAGCAGATCAAGAATGAAGAGAAAAACCCACCACTGACACCTCTAGGAACTGATGATAGTAATAACTACAATTCTTCTGCAAACCACAGCAATATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACCCCTCTCTGGAGAAGTGGACCAAAAGGTCCAAAGACACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGGCGTGCCATTGCCGTGGCTGCAACGGCAAACGGAATGAATCCGGTGGAGGCTGAGAAATCTCAAGTAAAGAAAGGAAACAAATTGCATAGCAAAGGGATGAAGTCCAAAACTAAGGGTGCACCACATATGAAAAAGAAGCGCAAACTTGGAGCGAAGTATAGAAAGAGGTTTGGTGCTTTTGAGGATTTGACAGTGAGATTGAGTAAGAACTTGGCTCTCCAAAAAGTCTTCCCTCCGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTTCTTCATGGCTTTCCCACAGATCGTTACGTCAATTACTTAGATTTATGA 978 0.4243 MIPTYRYSVSSPMPIDLNEDHTHHVFSTSHQASSSSSSLSFSILFNPDHQGQGGSCCHWESKHLQSDEEAQKIVPSSESWEHPVSEKDENRSDLKLRVWKKEDKCENFQVEDNSTKWMPLKMRMMRRMMVSDQTGFDTEGMISNSKQIKNEEKNPPLTPLGTDDSNNYNSSANHSNITVRVCSDCHTTKTPLWRSGPKGPKTLCNACGIRQRKARRAIAVAATANGMNPVEAEKSQVKKGNKLHSKGMKSKTKGAPHMKKKRKLGAKYRKRFGAFEDLTVRLSKNLALQKVFPPDEKEAAILLMALSYGLLHGFPTDRYVNYLDL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00570 325 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 313 - -
Gma09g00570 325 MobiDBLite consensus disorder prediction 231 263 - -
Gma09g00570 325 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
Gma09g00570 325 MobiDBLite consensus disorder prediction 67 90 - -
Gma09g00570 325 CDD ZnF_GATA 181 213 IPR000679 GO:0006355|GO:0043565
Gma09g00570 325 Gene3D - 178 271 IPR013088 GO:0006355|GO:0008270
Gma09g00570 325 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 313 - -
Gma09g00570 325 ProSiteProfiles GATA-type zinc finger domain profile. 180 212 IPR000679 GO:0006355|GO:0043565
Gma09g00570 325 MobiDBLite consensus disorder prediction 241 263 - -
Gma09g00570 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 217 - -
Gma09g00570 325 SMART GATA_3 176 227 IPR000679 GO:0006355|GO:0043565
Gma09g00570 325 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00570 Gma-Chr9 6111900 6114210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00570 113 313 C2C2-Gata Transcription Factor Family AT4G26150 34.361 1.22e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma09g00570 GATA 7.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00570 - - gmx:100792098 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00570 09 6111900 6114210 Gma09g00570 09 6111900 6114210 ECH
Gma15g01579 15 15320592 15322311 Gma09g00570 09 6111900 6114210 GST
Gma17g00521 17 4290842 4292937 Gma09g00570 09 6111900 6114210 PCT
Gma13g00838 13 22644952 22647043 Gma09g00570 09 6111900 6114210 PCT
Gma09g00570 09 6111900 6114210 Gma17g00521 17 4290842 4292937 PCT
Gma09g00570 09 6111900 6114210 Gma13g00838 13 22644952 22647043 PCT