Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00559 ATGATGGCATTGGATATGATTGATGTTGTTCCCAGGACGAGGATGGAAGAAGAAAATATAGCAATACAAGAAGCAGCTTCCGCTGGGTTAAAGAGCATGGAGCATCTCATTCGTCTCCTTTCTCCTTCTTCTTCTCTTCACAACAACCTTAATAATCTCAATCTCAACCACCTCGACTGCTCCGAAATCACCGGCTTCACTGTCTCCAAGTTCAAACAAGTCATCAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCTCTCCACCCCAAGCCCAAGCCCAAGCCCAAACTAATCCTCAACCACAACCTCAGATCCAACAACAAGGGTTCAGTTTAGATTTCGTGAAGCCCACCATTCTAAACTCAAAGCCCATCAACAAAGACGAAACTTTGACTCTTTCAACAACCTCTTCTTCCTTCATGTCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGACCTTTCCTCCCTCCCTCCGCCGCCAAACCCCCTCTCTCCTCCGCCCACCGGAAAAAGTGCCGCGACGCCGCCGCAGCACTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACGAACGATTCGGGTGCCGGCGATAAGCTCAAAGATCGCAGATATCCCACCGGACGAGTATTCGTGGAGAAAATACGGTCAAAAACCGATCAAGGGCTCACCTTACCCTCGAGGGTACTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCGCAGGATGACCCCAAGATGCTAATAGTGACTTACGAGGTAACGGCGGATGCGAACAAGGATCGATTCGGTTCGAGGACGGAAAAAGAAAAGTGGCAACTAAAGTCAACTTTCGCGTTGTGGAATGATTTTGTTGACGAGGACTTTTGTGTAAATTTGACCCCAAGTAAAGTAGTGCAGAGTTGA 960 0.5125 MMALDMIDVVPRTRMEEENIAIQEAASAGLKSMEHLIRLLSPSSSLHNNLNNLNLNHLDCSEITGFTVSKFKQVINLLNRTGHARFRRSPPQAQAQAQTNPQPQPQIQQQGFSLDFVKPTILNSKPINKDETLTLSTTSSSFMSSVTNDASVSDGKIGPFLPPSAAKPPLSSAHRKKCRDAAAALSAKPSCHCSKKRKSRVKRTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEVTADANKDRFGSRTEKEKWQLKSTFALWNDFVDEDFCVNLTPSKVVQS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00559 319 SMART WRKY_cls 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma09g00559 319 Pfam Plant zinc cluster domain 175 216 IPR018872 -
Gma09g00559 319 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 14 272 - -
Gma09g00559 319 Gene3D WRKY domain 197 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma09g00559 319 SUPERFAMILY WRKY DNA-binding domain 216 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma09g00559 319 MobiDBLite consensus disorder prediction 87 106 - -
Gma09g00559 319 Pfam WRKY DNA -binding domain 220 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma09g00559 319 ProSiteProfiles WRKY domain profile. 213 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma09g00559 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 272 IPR044810 GO:0003700
Gma09g00559 319 MobiDBLite consensus disorder prediction 91 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00559 Gma-Chr9 6000550 6002307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00559 7 271 WRKY Transcription Factor Family AT2G24570 51.645 2.07e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma09g00559 WRKY 1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00559 - - gmx:100127391 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00559 09 6000550 6002307 Gma09g00559 09 6000550 6002307 ECH
Gma15g01567 15 15129199 15130879 Gma09g00559 09 6000550 6002307 GST
Gma17g00539 17 4422176 4424101 Gma09g00559 09 6000550 6002307 PCT
Gma13g00822 13 22527082 22528331 Gma09g00559 09 6000550 6002307 PCT
Gma09g00559 09 6000550 6002307 Gma17g00539 17 4422176 4424101 PCT
Gma09g00559 09 6000550 6002307 Gma13g00822 13 22527082 22528331 PCT