Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00553 ATGAGTAGTTTCCAGAACGGTTCTTCGCCGCGTTCGCGGAACGCGGCGGAGAGTGACATAGAGGCCGGTACCTCCGCTCGCCGCTCTGATGACCTCGACGGCGGCGATTTCTCCGATCCCTTTGACATTGCCAGGACCAAGAACGCTTCGGTTGAACGCCTCAGGCGCTGGAGACAAGCAGCGCTTGTTCTGAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTAGAGCACATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGGGCCAGGGAGTGAACCTATTAAACCTCCTCCGGTCCCCACTGCTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCTAGGGAGCATGACACTGCTGCTCTGCAACAATATGGAGGGGTTGTAGGACTATCAAATTTGTTGAAAACCAATCCAGAGAAGGGTATTCATGGTGATGATGCTGACTTACTAAAACGAAGGAATGCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAGGTTTTCTGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCGGCTTCATTGGCACTTGGGATAAAATCCGAGGGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGAAGAGAAATATACACCTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAGTTCTGATCACTGGCCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAGGATTCAAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCTCTATGCTGGTCACTGGTGTTGGTGTCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGTATTGTAGGACTTACTGTTGCTGTTATTGTCCTAATTGTGCTACTGGCTAGATATTTCTCTGGGCATACTAAAAACCCAGATGGGTCAGTTCAATTCACAGCAGGCAAGACTAAAGTTGGTGATGCTATTGATGGTGCAATTAAGATAATAACTGTTGCGGTCACCATCGTAGTGGTTGCAGTACCAGAGGGGCTCCCATTAGCTGTTACTTTAACTCTGGCCTACTCGATGAGAAAGATGATGGCAGATAAAGCCTTGGTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGATGACTGTGGTTGAGGCTTACGCTGGGGGTAAGAAAATTGATCCTCCTCACAAGTTGGAGTCCTATCCTATGCTTCGCTCTCTGCTCATTGAAGGTGTTGCACAGAACACTAATGGCAGTGTTTATGCACCTGAGGGTGCTGCTAATGATGTCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAATGGGGAATACAGATTGGGATGAATTTTACGGCAGCTCGATCTGAATCATCAATTATTCATGTTTTCCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATTCAAACGGCTGACTCTAACATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACAGGCTATGTTGATGTGAATGACCAGCTGGTTGGGATGGATGAGGAGAAGatgacatttttcaaaaaagctattgaagacatggctgctgatagtctacgttgtgttgccattgcatatagatcatatgaaaaggagaaagttccaactaatgaagaactactctcacaatggtctttaccagaggatgatcttattttgctagctattgttggtcttaaggatccctgtcgacctggtgtcaaacatgctgtggaactctgccaaaaagctggggttaagGTGAAAATGGTCACTGGTGATAATGTGAAGACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTAAATTCATATGCTGATGCTACAGAGCCAAACATCATTGAAGGAAAAACATTTCGTGGCTTGTCAGATGCTCAGAGAGATGAAATTGCTGATAGGATATCGGTCATGGGACGGTCATCTCCCAATGACAAACTATTGTTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATTAATGTTGTTGCTGCAGTTTCGTCTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTGAATCTTATCATGGATACTCTGGGAGCGCTGGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGAACTCCAGTGGGTCGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGCATAAGCATACTGGGTCTGAGCCATGACAGAAAAGACCATGCAATCAAAGTGAAGAATACTTTGATATTCAATGCATTTGTTCTCTGTCAAATCTTTAATGAATTTAATGCTCGAAAGCCAGATGAATTCAACATATTCAAAGGAGTCACAAGAAACTACCTCTTTATGGGTATCATTGGATTAACTGTTGTGCTTCAGATTGTCATCATTTTATTTCTTGGCAAATTTACAACAACAGTGAGGCTTAATTGGAAGCAGTGGCTCATCTCTGTCGTTATTGGATTGATTGGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCAGTGCCAACAACTCCCATCAACAATGTTTTTTCAAAATTTCGAATTTCTAGAAAGGATCATGAGGAATCTCAATAG 3258 0.4048 MSSFQNGSSPRSRNAAESDIEAGTSARRSDDLDGGDFSDPFDIARTKNASVERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGGPGSEPIKPPPVPTAGEFPIGQEQLASISREHDTAALQQYGGVVGLSNLLKTNPEKGIHGDDADLLKRRNAFGSNNYPRKKGRGFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDIVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGSMLVTGVGVNTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVIVLIVLLARYFSGHTKNPDGSVQFTAGKTKVGDAIDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPHKLESYPMLRSLLIEGVAQNTNGSVYAPEGAANDVEVSGSPTEKAILQWGIQIGMNFTAARSESSIIHVFPFNSEKKRGGVAIQTADSNIHIHWKGAAEIVLACCTGYVDVNDQLVGMDEEKMTFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLSQWSLPEDDLILLAIVGLKDPCRPGVKHAVELCQKAGVKVKMVTGDNVKTAKAIAVECGILNSYADATEPNIIEGKTFRGLSDAQRDEIADRISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGISILGLSHDRKDHAIKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTRNYLFMGIIGLTVVLQIVIILFLGKFTTTVRLNWKQWLISVVIGLIGWPLAVIGKLIPVPTTPINNVFSKFRISRKDHEESQ 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00553 1085 SFLD p-type atpase 472 850 IPR044492 -
Gma09g00553 1085 MobiDBLite consensus disorder prediction 1 42 - -
Gma09g00553 1085 SFLD Haloacid Dehalogenase 472 850 - -
Gma09g00553 1085 Gene3D - 487 843 IPR023214 -
Gma09g00553 1085 Gene3D - 500 698 IPR023299 GO:0000166
Gma09g00553 1085 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Gma09g00553 1085 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Gma09g00553 1085 PRINTS P-type cation-transporting ATPase superfamily signature 691 702 - -
Gma09g00553 1085 PRINTS P-type cation-transporting ATPase superfamily signature 713 723 - -
Gma09g00553 1085 PRINTS P-type cation-transporting ATPase superfamily signature 798 817 - -
Gma09g00553 1085 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Gma09g00553 1085 Gene3D - 171 366 - -
Gma09g00553 1085 PANTHER CATION TRANSPORTING ATPASE 37 1076 - -
Gma09g00553 1085 SUPERFAMILY Calcium ATPase, transduction domain A 268 363 IPR008250 -
Gma09g00553 1085 CDD P-type_ATPase_Ca_PMCA-like 172 931 - -
Gma09g00553 1085 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 138 1062 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma09g00553 1085 MobiDBLite consensus disorder prediction 23 42 - -
Gma09g00553 1085 Pfam Cation transporting ATPase, C-terminus 883 1060 IPR006068 -
Gma09g00553 1085 SMART Cation_ATPase_N_a_2 146 220 IPR004014 -
Gma09g00553 1085 Gene3D - 49 104 - -
Gma09g00553 1085 ProSitePatterns E1-E2 ATPases phosphorylation site. 492 498 IPR018303 -
Gma09g00553 1085 PRINTS Sodium/potassium-transporting ATPase signature 233 253 - -
Gma09g00553 1085 PRINTS Sodium/potassium-transporting ATPase signature 483 504 - -
Gma09g00553 1085 PRINTS Sodium/potassium-transporting ATPase signature 609 627 - -
Gma09g00553 1085 Pfam haloacid dehalogenase-like hydrolase 487 812 - -
Gma09g00553 1085 Gene3D - 198 1049 - -
Gma09g00553 1085 Pfam Ca2+-ATPase N terminal autoinhibitory domain 39 81 IPR024750 GO:0005516
Gma09g00553 1085 PANTHER CALCIUM-TRANSPORTING ATPASE 37 1076 - -
Gma09g00553 1085 SUPERFAMILY HAD-like 488 903 IPR036412 -
Gma09g00553 1085 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 765 878 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma09g00553 1085 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 431 513 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma09g00553 1085 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 703 IPR023299 GO:0000166
Gma09g00553 1085 MobiDBLite consensus disorder prediction 1 19 - -
Gma09g00553 1085 Pfam E1-E2 ATPase 268 468 - -
Gma09g00553 1085 SUPERFAMILY Calcium ATPase, transmembrane domain M 149 1062 IPR023298 -
Gma09g00553 1085 Pfam Cation transporter/ATPase, N-terminus 148 215 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00553 Gma-Chr9 5909228 5925819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00553 1 1084 Primary Pumps ATPases AT5G57110 74.125 0.0 1617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00553 K01537 - gmx:100820121 2082.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00553 09 5909228 5925819 Gma09g00553 09 5909228 5925819 ECH
Gma15g01560 15 14996624 15020366 Gma09g00553 09 5909228 5925819 GST
Gma17g00545 17 4466032 4488053 Gma09g00553 09 5909228 5925819 PCT
Gma13g00819 13 22488390 22508519 Gma09g00553 09 5909228 5925819 PCT
Gma09g00553 09 5909228 5925819 Gma17g00545 17 4466032 4488053 PCT
Gma09g00553 09 5909228 5925819 Gma13g00819 13 22488390 22508519 PCT