Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00552 ATGGGCGAAGCGAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAGAGGAACGAGGAGTGGGCTTTGGAGAAGAAGCAGGAACTCGATGCCGCAAAGAAAAAGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAGTACTCAAAGGAATACGACGAGCAGCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCTGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACCGTGAATATGCTGCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATATTGACTGTTGGACCTCATTTCAAGGAGGCCAACAATTTTCTGTGGCCTTTTAAGCTCAAAGCTCCCCTTGGTGGTTTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 729 0.4321 MGEAKALVPESVVKKEKRNEEWALEKKQELDAAKKKRFETRKLIFNRAKQYSKEYDEQQKELIRLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKVNKQRIALNDNSIVEQTLGKHGIICVEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00552 242 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 242 - -
Gma09g00552 242 SUPERFAMILY Ribosomal protein L30p/L7e 83 242 IPR036919 -
Gma09g00552 242 Pfam Ribosomal L30 N-terminal domain 8 79 IPR012988 -
Gma09g00552 242 ProSitePatterns Ribosomal protein L30 signature. 102 134 IPR018038 -
Gma09g00552 242 CDD Ribosomal_L7_archeal_euk 83 242 IPR035808 -
Gma09g00552 242 Pfam Ribosomal protein L30p/L7e 84 134 IPR016082 -
Gma09g00552 242 PANTHER 60S RIBOSOMAL PROTEIN L7 4 242 IPR039699 -
Gma09g00552 242 Coils Coil 48 68 - -
Gma09g00552 242 Gene3D - 83 188 IPR036919 -
Gma09g00552 242 Gene3D - 189 242 IPR036919 -
Gma09g00552 242 TIGRFAM uL30_euk: 60S ribosomal protein uL30 9 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00552 Gma-Chr9 5856963 5859409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00552 2 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.647 8.13e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00552 K02937 - gmx:100306213 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00552 09 5856963 5859409 Gma09g00552 09 5856963 5859409 ECH
Gma15g01559 15 14960740 14963367 Gma09g00552 09 5856963 5859409 GST