Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00546 ATGGAGAATATTGGAGAAGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAACTTGACAGTTGGGGGTTGGATGAGGCCTTATCTGGGTACTACGATTCGAGTTCCCCGGACGGCGCTGCTTCGTCTGCGGCATCTAAGAACATTGTTTCCGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCGCTTAGATCGGTGGTACCTAACATTAGCAAGATGGACAAGGCTTCGATTATCAAGGATGCTATTGAGTACATCCAGCACTTGCACGAGCAAGAGAAGATTATCCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCAAGAAAGAGTCCAAGCTATGGTTTTGAGCAAGAACAGCTTCCTGTGGTTCTCAGGTCCAAGAAGAAGAGAACAGAGCAGCTATATGATTCTGTTACTTCAAGAAACACCCCAATTGAAGTCCTTGAGCTGAGGGTTACATACATGGGGGAGAAAACTGTTGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGTGAAGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCCAACATCACTTCGTTTTCAGGGAGGCTTTTGAAGACTGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCATTTGCAGATAAAGATCCAGACAGCCATTAAAGCTCTTAATAATGACCCTTTAAGCCCCATGAGCATTTGA 735 0.4435 MENIGEEYKHYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPRKSPSYGFEQEQLPVVLRSKKKRTEQLYDSVTSRNTPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDHLQIKIQTAIKALNNDPLSPMSI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00546 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Gma09g00546 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Gma09g00546 244 SMART finulus 53 102 IPR011598 GO:0046983
Gma09g00546 244 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Gma09g00546 244 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Gma09g00546 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Gma09g00546 244 Coils Coil 213 233 - -
Gma09g00546 244 Gene3D - 44 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00546 Gma-Chr9 5709501 5717655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00546 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.470 1.27e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g00546 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00546 - - gmx:100817978 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00546 09 5709501 5717655 Gma09g00546 09 5709501 5717655 ECH
Gma15g01552 15 14730461 14738740 Gma09g00546 09 5709501 5717655 GST
Gma17g00552 17 4555162 4559599 Gma09g00546 09 5709501 5717655 PCT
Gma13g00813 13 22410511 22417937 Gma09g00546 09 5709501 5717655 PCT
Gma09g00546 09 5709501 5717655 Gma17g00552 17 4555162 4559599 PCT
Gma09g00546 09 5709501 5717655 Gma13g00813 13 22410511 22417937 PCT