Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00545 ATGCAGATGGGATTGAATAATATTGTTTACACTTTATGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATAATCATGATAATCCTGAAAGATCTAAAACTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCTGAAGTCTTGTTTAAAGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAATCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGTGGCTGCATTCAAATTCGTAAAAATAGAACTGAGATACATTTCTTCTCAAGGCAAGTGCATATGAACTTTATTGATCATTCTGAATATGCACATGCGATGTCCGAAATCATAATACAAAATGTTCTTGTTGATAGGCGAACATTTATTTTGTGCATCCTTGATGGTGAAATGTTGGTGTGGGATACATCCTTGAAACATTTTGCTGAGTTTGGTTCAAATCAGGAAATAGCCAAGGCAGCAAGAGACGGACCTGATAGTGATAGACAGGAACAGCATGAGATTTTGTGTAAAATTGTAAGGCCAGTGAAGGGTCGTTTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTTATATTTCTTCTGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTGGATGGAGTTGAGAGGTTTTTCATAAAAACCATTGAAAATAGAGACGTGGGAATTGTTTTAAAAGACCACAGCTCCAAATGGGAACCTAGTGATTGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTGCTATGGCTCTGGACGACGTGGAGGAGAGGTTGCTCGATTCTTGGTTGGCCTCGCAGAGCGTCCATCCCCAAATACGCACCCTAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTCTCTGATGATGAGCTTGATGCTGTAGTGACCAAACAAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGACGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATATGTGGGTTGATAGCCCTGAGAAATTAATTATTCGGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTTCTGCACCTTACAGTCTCGGATTGACAGGCGTTAAGGGGGGGTCCTTAATATTTTCAAATATGATGTTCTATTTTGTTAATGTGCCTCAATCTCATTCTCCCGAGTCCTTGCACAAATTAATTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAATAACTCAGTCATGCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAGCATCATGGTGATATCATTCATTATTCTTGGGTGTTAGATTGCTATGAACAAAAGAAGCTTTTCTGCTTACAGCCTAAGTACTTCCTTTTTCTATCTGGACTGACAAAGAAGTTACAGGAAGAAGTTGATGAGTTCTCAGACACTTACCACTTGGACCTTGATCTTGGAGACATCAAGCCGCTCTTAAGCAATATTCATTGGTCAAAAGATGCTAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTACAGATGCTCCATTTATTTCCACTATGTGATACCTTCATTGAAAAGTGATTGGCATTTTATGTTGCAACTTGCTCTGAGGAGATTTAAGCTTGAAGTTCTAATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTGTGCAACCCATTTAGTGGCCTTGCTTGTGCCAGGATATCAGACTGACTTTGAACAAATACAGAGTAGTTTCACTTCAGTAGAAAGAAAATTTCTGCAAAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTAGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACATGTACTACATAACAAATTTTTACTTTATTTTGATTAGCCCCTGTGAAGTGGACTTGGGGTTAGAGGCTCATCTGAGTGGAGATAATGTAGAAGAACAAAAAATTTCTTTCTCTGACAAGGGAATTCAACAGAGGAGTGTTAAAGCTGTTTGTGAAGACAGTATGGCTTTGGTATCCCAAGAGAAGGGTGGCAAAAAAAAAGAGAAAGACCTGCAGGCAGTGGAGATTGACACGAGTGCAGGAAGTCTTGATTTTTACAAGAAACGTTCAGAACCACAGGAGACTGAGGAATGTGAAAATGTCCAAGTTGCTGAGATTGGGGAAAATTTTGAACAAAATAAGGCAGACAAGCAAGAGGACTTGAATGACAATGAACATGAAAGAATGTTGGTTCCTGAAATAGAAATGTCTGATAGGCACAATGAGCAAAGCAATGAGGTTACTGAGAAACTTGAAATTTCGGATTACCCTCTGCAGGCAATGTTATTTGACATGATTCCTAGCCTTGCCACCCAAAAAGTCAAGCAACCGATGAATCGAAGTGTTAGAGAAGAGAAGCTACCAGAAACCTCCAATGCAGAAGCGGAGCCTATGATTACTAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTAGTGAGCTGCTGAAGGGCTGGTAA 2733 0.393 MQMGLNNIVYTLWAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEVLFKVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKNLHGKEVVVECKFDGGCIQIRKNRTEIHFFSRQVHMNFIDHSEYAHAMSEIIIQNVLVDRRTFILCILDGEMLVWDTSLKHFAEFGSNQEIAKAARDGPDSDRQEQHEILCKIVRPVKGRLEILVPNAGINSYISSGEPCWSFIAHNVDGVERFFIKTIENRDVGIVLKDHSSKWEPSDCSGKWLKLKPEYIQAGSDLDVLIIGGCYGSGRRGGEVARFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKQKPYFRKYEYPKKTPPSFYQVTNHSKERPDMWVDSPEKLIIRSITSDIRTIESEVFSAPYSLGLTGVKGGSLIFSNMMFYFVNVPQSHSPESLHKLIAENGGTFSMNLNNSVMHCVAADSKGFKFEAAKHHGDIIHYSWVLDCYEQKKLFCLQPKYFLFLSGLTKKLQEEVDEFSDTYHLDLDLGDIKPLLSNIHWSKDASTVDHYRKKYCPKDKWSFFYRCSIYFHYVIPSLKSDWHFMLQLALRRFKLEVLMGGGKVTSNLTCATHLVALLVPGYQTDFEQIQSSFTSVERKFLQSKRLHIVKSQWLEDCSDSSQRLPEDSYMYYITNFYFILISPCEVDLGLEAHLSGDNVEEQKISFSDKGIQQRSVKAVCEDSMALVSQEKGGKKKEKDLQAVEIDTSAGSLDFYKKRSEPQETEECENVQVAEIGENFEQNKADKQEDLNDNEHERMLVPEIEMSDRHNEQSNEVTEKLEISDYPLQAMLFDMIPSLATQKVKQPMNRSVREEKLPETSNAEAEPMITKKKKVSYKDVASELLKGW 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00545 910 ProSiteProfiles BRCT domain profile. 437 525 IPR001357 -
Gma09g00545 910 Gene3D BRCT domain 439 540 IPR036420 -
Gma09g00545 910 Gene3D BRCT domain 582 693 IPR036420 -
Gma09g00545 910 Pfam BRCT domain, a BRCA1 C-terminus domain 439 521 IPR001357 -
Gma09g00545 910 ProSiteProfiles BRCT domain profile. 624 694 IPR001357 -
Gma09g00545 910 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 56 300 - -
Gma09g00545 910 SMART BRCT_7 439 515 IPR001357 -
Gma09g00545 910 SMART BRCT_7 584 684 IPR001357 -
Gma09g00545 910 PANTHER DNA LIGASE 4 15 430 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Gma09g00545 910 PANTHER DNA LIGASE 4 434 693 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Gma09g00545 910 Pfam ATP dependent DNA ligase C terminal region 323 408 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gma09g00545 910 SUPERFAMILY Nucleic acid-binding proteins 307 407 IPR012340 -
Gma09g00545 910 MobiDBLite consensus disorder prediction 866 889 - -
Gma09g00545 910 Gene3D - 13 89 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma09g00545 910 SUPERFAMILY BRCT domain 574 694 IPR036420 -
Gma09g00545 910 SUPERFAMILY BRCT domain 441 526 IPR036420 -
Gma09g00545 910 Pfam DNA ligase N terminus 15 57 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma09g00545 910 Gene3D DNA ligase/mRNA capping enzyme 91 212 - -
Gma09g00545 910 Gene3D DNA ligase/mRNA capping enzyme 213 301 - -
Gma09g00545 910 Gene3D - 302 437 IPR012340 -
Gma09g00545 910 CDD Adenylation_DNA_ligase_IV 85 304 IPR044125 GO:0005524
Gma09g00545 910 MobiDBLite consensus disorder prediction 870 889 - -
Gma09g00545 910 ProSiteProfiles ATP-dependent DNA ligase family profile. 216 336 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma09g00545 910 Pfam ATP dependent DNA ligase domain 97 299 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00545 Gma-Chr9 5692330 5708839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00545 85 446 Core DNA Replication Machinery Family AT1G08130 23.773 6.20e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00545 K10777 - gmx:100816002 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00545 09 5692330 5708839 Gma09g00545 09 5692330 5708839 ECH
Gma15g01551 15 14709714 14729972 Gma09g00545 09 5692330 5708839 GST