Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00541 ATGCGGGATGTGGATAGTTTAAATAGCGAAGGATCTGGAAAATCTAGTTACTCACAGGAACAGACTATGTCCAAGCTAGTTTCCTCGAAATTCAAAACAAGTAGCACAAAATGCCAAGAGAAGAAACACAAAGTTAAGTTAAAATCTCATAAACACAGAGCTGGTACAAACAAATCAAAGAAGACAGTTACGGATTCTTCCATAAAGGCACCGCTTGAGGATTCTTCGAATAAAAAAGTGATTATTAGAAAATATCGGCATAAAACCGATGGGAAATCTTCGCGGATGCTGTCTTCAACAAAGCTAGAAGGAGGAAAAAATTCTCATAGTTCTGGAATAGAGGGGAATGATGTTGATGGGGAGGAAAAGATTAAAAAACATAAGAGAAGAAAGAAGAAAAGACAAAGGAATAACATGGATGTTGATGATGCTTCACGCCTGCGAAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAAAAGCAGATTTTAAAATGTAAACTTAATATTCGTGATGCCATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTATCATGAAAATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCCTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTTCTATGCCTGATGGTGACATTGCATTGCTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAAGAAAGAAGACAGCCACAGCATCGACATAGAAGGAGATGATGGAAATGCATCCAATGATTCAACCAGTTCTTCCAGTCTGTGGTCTTTGAATGGTGAATGTCCTCCAGTAGATGAAGGCGTCAGTCATGAATACTATTCTGTTAATAGCTGCATAGATTCTAATGAATCTGGGGAAATAGCATGTGGCCCTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTCAATACTCTTATGACTCTGCATGAAAGTGAGAATAAACATTCCAATAATGAGAAAAATGATACAACAAGAGAGGGCTCTTCAGGCATACAAATAAGAAGATCTTGTTTCAGGATTCCGGTTGATGCCGTTGAGAAACTTCGCCAAGCTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAGGACAGTCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTTAGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACTTCTAAGATCTCAACGGACTCTATATCTCAAATTGTGGAGAAAGATGAGCTTTTGAAATCAACGGTCTCCAAAATTACTGTGATTCATTCCCAGAAGGATGGTAAAAACATCACAGGCAAAGAGAAAAATAACTTATCTGACAGTCTTTTGAAGAAAAGGCAACAACAAGAAATACCTCCACCTTTGGAAAGAGAAAATGGCAACAAGGATTCTATGGAGGTCAGCAATGATGTTAAGTTGAAGAAAATGCTGAAAAAAAGGAAAAGAGGGGTAAATATTATATTTGAAGGAGATTCTCAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGAGGAAACTAGATAGCATGAAGCAGAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGGTTCAAATGAACCCTCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGGTTGAAAAATAA 2145 0.3916 MRDVDSLNSEGSGKSSYSQEQTMSKLVSSKFKTSSTKCQEKKHKVKLKSHKHRAGTNKSKKTVTDSSIKAPLEDSSNKKVIIRKYRHKTDGKSSRMLSSTKLEGGKNSHSSGIEGNDVDGEEKIKKHKRRKKKRQRNNMDVDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLNIRDAIRQLDSLSSVGSIEDSAIAPDGSVYHENIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEASMPDGDIALLNPEEEWPSDDPEDDDYNPEKKEDSHSIDIEGDDGNASNDSTSSSSLWSLNGECPPVDEGVSHEYYSVNSCIDSNESGEIACGPRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHSNNEKNDTTREGSSGIQIRRSCFRIPVDAVEKLRQAFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSKISTDSISQIVEKDELLKSTVSKITVIHSQKDGKNITGKEKNNLSDSLLKKRQQQEIPPPLERENGNKDSMEVSNDVKLKKMLKKRKRGVNIIFEGDSQAAELEFERLSKVKRKLDSMKQKLNEVQNCRAKGSNEPSIIYVPTAQLREKVEK 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00541 714 MobiDBLite consensus disorder prediction 346 360 - -
Gma09g00541 714 MobiDBLite consensus disorder prediction 596 635 - -
Gma09g00541 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 7 694 - -
Gma09g00541 714 Gene3D - 489 556 - -
Gma09g00541 714 SMART PHD_3 234 287 IPR001965 -
Gma09g00541 714 MobiDBLite consensus disorder prediction 618 635 - -
Gma09g00541 714 CDD homeodomain 495 542 IPR001356 GO:0003677
Gma09g00541 714 PANTHER POLYCOMB PROTEIN PCL 7 694 - -
Gma09g00541 714 MobiDBLite consensus disorder prediction 95 114 - -
Gma09g00541 714 MobiDBLite consensus disorder prediction 361 378 - -
Gma09g00541 714 MobiDBLite consensus disorder prediction 326 378 - -
Gma09g00541 714 MobiDBLite consensus disorder prediction 428 459 - -
Gma09g00541 714 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Gma09g00541 714 MobiDBLite consensus disorder prediction 41 57 - -
Gma09g00541 714 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
Gma09g00541 714 MobiDBLite consensus disorder prediction 8 34 - -
Gma09g00541 714 SMART HOX_1 489 551 IPR001356 GO:0003677
Gma09g00541 714 Pfam PHD-finger 234 289 IPR019787 -
Gma09g00541 714 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Gma09g00541 714 MobiDBLite consensus disorder prediction 1 144 - -
Gma09g00541 714 MobiDBLite consensus disorder prediction 331 345 - -
Gma09g00541 714 CDD PHD_PRHA_like 234 286 IPR045876 -
Gma09g00541 714 MobiDBLite consensus disorder prediction 428 486 - -
Gma09g00541 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Gma09g00541 714 SUPERFAMILY FYVE/PHD zinc finger 226 291 IPR011011 -
Gma09g00541 714 SUPERFAMILY Homeodomain-like 490 553 IPR009057 -
Gma09g00541 714 Pfam Homeodomain 499 542 IPR001356 GO:0003677
Gma09g00541 714 Coils Coil 670 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00541 Gma-Chr9 5650464 5657183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00541 137 552 Homeobox Transcription Factor Family AT4G29940 59.346 2.31e-161 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gma09g00541 Homeodomain 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00541 - - gmx:100816912 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00541 09 5650464 5657183 Gma09g00541 09 5650464 5657183 ECH
Gma15g01547 15 14630280 14650538 Gma09g00541 09 5650464 5657183 GST
Gma17g00559 17 4598883 4603247 Gma09g00541 09 5650464 5657183 PCT
Gma13g00807 13 22370006 22374464 Gma09g00541 09 5650464 5657183 PCT
Gma09g00541 09 5650464 5657183 Gma17g00559 17 4598883 4603247 PCT
Gma09g00541 09 5650464 5657183 Gma13g00807 13 22370006 22374464 PCT