Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00523 ATGTCCAAACATTTCAATTCTGATGTTGAAATGTTAACAAACACCTATAGGTTGGTCTACGACTTCGAGATAATTGAAGTGATAATCTCATGCTGCAAGGACTTATGTGGGATCAGTTGTTGGCTTCAACTTTGTAACTCACATTTCTCCAACTATTATACTGGTGTGCAGGCTCTTGAAATACTCACTGGCTGCTTCATTCTCGTCCAGGGAAACACAATTGCTGTTATGGGTTCATTCATAGGATTGAAGCAAGTCAGAAGAATTGTTGAAGAATGCATGATGAATAAAATGCATCCTGTATACAACATtaagAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATTACACCCAAAAAACCAAACTCTGCTTTACGTAAAGTTGCCAGAGTACGCTTAACCTTTGGATTTGAAATTACTGCTTATATACCCGGTATTGACCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGGAGGGTTAAAGATTTACCCGGTGTGACATATCACATTGTTCGAGGAACCCTAGATGCTGTTGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCgaatccgaatctgattctccaagttggagaaaatttaactccgacatga 636 0.3632 MSKHFNSDVEMLTNTYRLVYDFEIIEVIISCCKDLCGISCWLQLCNSHFSNYYTGVQALEILTGCFILVQGNTIAVMGSFIGLKQVRRIVEECMMNKMHPVYNIKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTFGFEITAYIPGIDHNLQEHSVVLVRGGRVKDLPGVTYHIVRGTLDAVGVKDRQQGRSSANPNLILQVGENLTPT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00523 211 PRINTS Ribosomal protein S12 signature 121 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 PRINTS Ribosomal protein S12 signature 137 156 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 PRINTS Ribosomal protein S12 signature 156 173 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 PRINTS Ribosomal protein S12 signature 173 189 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 TIGRFAM rpsL_bact: ribosomal protein uS12 104 195 IPR005679 GO:0003735|GO:0006412|GO:0015935
Gma09g00523 211 Pfam Ribosomal protein S12/S23 112 192 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 Gene3D - 82 199 IPR012340 -
Gma09g00523 211 SUPERFAMILY Nucleic acid-binding proteins 113 195 IPR012340 -
Gma09g00523 211 PANTHER 30S RIBOSOMAL PROTEIN S12-B 100 197 - -
Gma09g00523 211 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 100 197 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 56 101 IPR036612 GO:0003723
Gma09g00523 211 ProSitePatterns Ribosomal protein S12 signature. 122 129 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma09g00523 211 CDD Ribosomal_S12 118 189 IPR005679 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00523 Gma-Chr9 5415308 5418087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00523 119 178 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 42.647 2.64e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00523 K02950 - gmx:100776305 293.893