Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00476 ATGGCGACGACGTCGGTGGTGCCGGCGAATCGGCGGCGTGCGGCGGCGAACCCCGCCGAGGATATGGACTTCGAGACGACGGAGGGCGTGAAGGCCATCGCGAGCTTCGAGGAGATGGGGATCAAGGACGATCTGCTCCGCGGAATCTACCAGTACGGCTTCGAGAAGCCCTCAGCCATTCAGCAGCGGGCCGTGACTCCGATCATTCAGGGCCGTGACGTCATCGCCCAGGCCCAATCCGGAACGGGCAAAACCTCCATGATTGCTCTCACCGTTTGCCAGGTCGTCGATACCTCCGTCAGAGAGGTTCAGGCTTTAATATTGTCACCAACGAGGGAACTGGCCTCGCAAACTGAGAAGGTTATATTGGCTATTGGGGATTTCATCAATATACAAGCTCATGCATGCGTTGGAGGTAAAAGTGTGGGAGAAGACATAAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTTTGTGACATGATCAAAAGGAGAACATTACGCACAAGGGCTATCAAGATGCTAGTTCTTGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCTGACCTTCAGGTTTGTTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAACAAGTTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGggcatcaagcaattttttgttgcggtcgaaagggaggaatggaagtttgataccctgtgtgatctttatgataccctcactatcactcaagctgttatattctgtaatactaagcgaaagGTGGACTGGTTAACTGAAAAAATGCGTAACAACAATTTCACTGTCTCATCAATGCACGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTGCTAATAACAACTGACGTTTGGGCCCGTGGTCTTGATGTACAGCAGGCAAGTTTTATCAATTATGACCTTCCCAATAATCGTGAGCTTTACATTCATCGAATTGGTCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCAATAAATTTTGTGAAGAGTGATGACATCAAGATCTTGAGAGACATTGAACAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1221 0.4234 MATTSVVPANRRRAAANPAEDMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQASFINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00476 406 Pfam Helicase conserved C-terminal domain 260 367 IPR001650 -
Gma09g00476 406 SMART ultradead3 53 250 IPR014001 -
Gma09g00476 406 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 406 IPR001650 -
Gma09g00476 406 Gene3D - 239 406 IPR027417 -
Gma09g00476 406 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 65 235 IPR014001 -
Gma09g00476 406 SMART helicmild6 287 367 IPR001650 -
Gma09g00476 406 Pfam DEAD/DEAH box helicase 59 221 IPR011545 GO:0003676|GO:0005524
Gma09g00476 406 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 34 62 IPR014014 GO:0003724
Gma09g00476 406 CDD DEADc_EIF4AIII_DDX48 36 236 - -
Gma09g00476 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 389 IPR027417 -
Gma09g00476 406 CDD SF2_C_DEAD 247 376 - -
Gma09g00476 406 Gene3D - 19 238 IPR027417 -
Gma09g00476 406 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 399 - -
Gma09g00476 406 PANTHER BNAC03G41130D PROTEIN 21 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00476 Gma-Chr9 4689944 4693522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00476 24 406 Eukaryotic Initiation Factors Gene Family AT3G19760 88.542 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00476 K13025 - gmx:100800020 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01486 15 13544510 13548887 Gma09g00476 09 4689944 4693522 GST