Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00427 ATGGAAGATAGCATTGGAGGCAGTTCCTCAAACGACAACAACATCATCAAGGAACAGGACCGATTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTCTTCCTCAGAACGCGAAAATCTCGAAGGAGGCGAAAGAAACGATGCAGGAATGTGTGTCGGAGTTCATAAGCTTCGTGACCAGCGAGGCTTCGGAGAAGTGCAGGAAGGAGAGAAGGAAGACAGTGAATGGTGATGACATTTGTTGGGCCTTGGCAACACTAGGCTTTGATGACTATGCTGAACCAATGAGAAGGAAATCAAGGACGAAAATCCAGGAAGCATCAACCAACCAAAATGATTTGTGTTGA 354 0.4661 MEDSIGGSSSNDNNIIKEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRKSRTKIQEASTNQNDLC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00427 117 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma09g00427 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 102 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma09g00427 117 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Gma09g00427 117 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Gma09g00427 117 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Gma09g00427 117 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 8 102 - -
Gma09g00427 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Gma09g00427 117 SUPERFAMILY Histone-fold 19 110 IPR009072 GO:0046982
Gma09g00427 117 Gene3D Histone, subunit A 11 115 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00427 Gma-Chr9 4020343 4021831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00427 15 100 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.233 4.08e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma09g00427 CBFD_NFYB_HMF 2.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00427 K08065 - gmx:102663543 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00427 09 4020343 4021831 Gma09g00427 09 4020343 4021831 ECH
Gma15g01435 15 12929069 12929503 Gma09g00427 09 4020343 4021831 GST
Gma17g00231 17 1885494 1885865 Gma09g00427 09 4020343 4021831 PCT
Gma09g00427 09 4020343 4021831 Gma17g00231 17 1885494 1885865 PCT