Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00389 ATGGCTGAAGATGGGAACAACAACGATGTACCCTTACACAAATTCAAAGACAGCAATCCAAACCCTGAAGAGTTCGATGCAAAGGGTTACAGCCTCAGCGGAAAAATCATGCTTTCAGCAATAATCCTTCTTTTCTTCGTCGTCGTTTTGATGTTGTGCCTTCATATCTACGCGCGCTGGTACCTCCGGCGTGCTCGCCGCCGCCAGCTCCGGCGCCAACGCGAGCTCCGCCGCACCCAGCTTGTCTTTTACAACGACGACGCCACCCCCGCAGCCGTGTCACGTGGCCTCGACGCCGCCATCCTTGCCACACTCCCCGTCTTCACCTTCGACCCGGAAAAAACCGGGCCGGAGTGCGCTGTTTGCTTGTCGGAGTTCGAACCCGGTGAAACGGGTCGGGTCTTGCCCAAATGTAATCACAGTTTCCACATAGAATGTATTGACATGTGGTTCCATTCTCATGACACGTGTCCTCTTTGTCGCGCCCCGGTTGAACGCGCGCCGGAACCGGAAGTGGTTGTTATAACGGTACCCGATCCGGTTTCCGAAACCGGTTCAGGCGAAAATGAGAACCGAACCGGTTCTTCTTCTTCTTCCTCTTCGGTTGGATTGAGTAAGCCTAAGCCTTCGTTGGTTGGTGTGACAATTGAGGTGCCTCCGAGGGACGAGAATTTTCAAAACGAGTTGCAACCGAGTTGCGACTCGTCCTCCTCGTTTCGGTCGCCGATGAGTCGCATGCTGTCGTTTACGAGGATGCTCGGCAGGGAAAAGAAGGGGAACGTGTCGCCGTCGTCGTGCGGCGGCGGCGATTGTAGCTCCGCCGCGGAGCGAGGTGAGCGAGAGGAGACTCAGTGA 855 0.5567 MAEDGNNNDVPLHKFKDSNPNPEEFDAKGYSLSGKIMLSAIILLFFVVVLMLCLHIYARWYLRRARRRQLRRQRELRRTQLVFYNDDATPAAVSRGLDAAILATLPVFTFDPEKTGPECAVCLSEFEPGETGRVLPKCNHSFHIECIDMWFHSHDTCPLCRAPVERAPEPEVVVITVPDPVSETGSGENENRTGSSSSSSSVGLSKPKPSLVGVTIEVPPRDENFQNELQPSCDSSSSFRSPMSRMLSFTRMLGREKKGNVSPSSCGGGDCSSAAERGEREETQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00389 284 PANTHER RING-H2 FINGER PROTEIN ATL64 27 203 - -
Gma09g00389 284 MobiDBLite consensus disorder prediction 182 206 - -
Gma09g00389 284 SUPERFAMILY RING/U-box 118 166 - -
Gma09g00389 284 MobiDBLite consensus disorder prediction 1 20 - -
Gma09g00389 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 169 IPR013083 -
Gma09g00389 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 27 203 - -
Gma09g00389 284 CDD RING-H2_EL5_like 118 161 - -
Gma09g00389 284 MobiDBLite consensus disorder prediction 177 284 - -
Gma09g00389 284 Pfam Ring finger domain 118 161 IPR001841 -
Gma09g00389 284 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gma09g00389 284 SMART ring_2 119 160 IPR001841 -
Gma09g00389 284 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00389 Gma-Chr9 3654638 3655889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00389 27 263 Rapid Response to Elicitors AT3G16720 53.101 5.91e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00389 - - gmx:100791545 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00389 09 3654638 3655889 Gma09g00389 09 3654638 3655889 ECH
Gma17g00263 17 2148602 2149810 Gma09g00389 09 3654638 3655889 PCT
Gma09g00389 09 3654638 3655889 Gma17g00263 17 2148602 2149810 PCT