Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00387 ATGGCTGATTACGATGGTAAAGAACAAAAAAGAAGGTTTGCCGTTCTTGGCATCTCTTCAATCCTTCTTGTGGCGATGGTGGCCGCGGTGGCAGTTACAATAAACCGTGGAGGTAATAAAGGAGAAGAAGGGGATGATGAATCTCGTGTCCAAACCGCTCAAAGGAACAACGTAGAAATGATTTGCAATTCAACAGAATACAAAGAAACCTGCAAGAAGAGCCTTGAAAAAGCGTCGTCGGACGAAAATGCGGACACAAAGGAGCTCATCAAGGCCGCGTTCAATGCCTCGGCCGTGGAACTTTTGAACCACATAAAGAACTCAACCCTTTACAAAGAGCTGGCCAAGGACAACATGACAAGACAAGCAATGGATATTTGCAAGGAAGTGTTTGATTATGCGATTGATGGTGTTCAGAAATCCATTGAGACATTGGACAAGTTTGAATTCATCAAGTTGAGTGAATATGTTTATGACCTAAAAGTTTGGCTCACGGGGAGTCTTTCTCACCAACAAACATGCTTGGATGGTTTTGAGAACACAAACACAAAAGCAGGTGAGAAAATGGCAAAGGCTATGAACGCATCTTTGGAGCTTAGTAGCAATGCATTGGACATGATCAATTTCATCTCTGGCTTAATCAAGGATCTTAACATAAGCTCACTTGTTGGTAATAATAGGAGACTTCTCAGCTCTAAGGAAGAAGCACTTGTAGATGGTTACCCTTCGTGGGTGAGTGAAGGGCAAAGACGTCTTCTAGGGCTTTCAAGTATTAAACCTAATGCAACTGTGGCAAAAGATGGGTCTGGCCAATTTGCAACACTCACTGATGCTCTTAAGACTGTTCCCCCTAAAAATGCTCAAGCTTTTGTGATCTATGTCAAGGCTGGTGTGTACAAAGAAAATGTGAATGTGGGCATGGACATGACCCATGTCACAGTTATTGGAGATGGTCCTAAAAAGACGAGGTTCAGTGGTAGTTTAAATTACAAAGATGGTGTCCAAACTTTCAACTCTGCTACCTTTGCTGTTAATGGTGCCAACTTCATGGCCAAGGATATTGGATTTGAAAACACAGCAGGGTCTTCGAAACAACAAGCAGTGGCACTTTTAGTAACAGCAGACCAAGCTGTGTTCTACAATTGTCAAATGGACGGGTTCCAAGACACTCTTTTTGCCCAATCTCAACGCCAATTCTACCGTGATTGCACCATCAGTGGCACCATTGACTTTATCTTTGGGGATGCCTTTGCAGTTTTCCAAAACTGCCAACTAATTGTGAGAAACCCCTTAAAGGGTGCACGATGCATGGTGACAGCTGGTGGCAGAGTCAAAGCTAATAGTGCTAGTGCCCTTGTGTTTCAAAGCTGCCACTTCACTGGAGAACCCGAATTGGCTTCTGCAGAACCTAAGCTAGCATTCCTTGGAAGGCCATGGATGCCATACTCTAAGGTGGTGATCATGGACTCTCAAATTGAAAATATCTTTTTACCTGAAGGGTACGAGGCATGGACAGCAAATGCAAACAAGGACACATGCACATATTATGAGTATAACAACAAGGGCCCTGGTGCTGACACCTCAAAAAGAGTTAAATGGCAAGGTGTTAAGGTCATAACCTCTACTGAAGCAAATAATTATTATCCTGGGAAGTTCTATGAACTTGCTAATTCAACTTCACGTGATGCATGGATTACTGATGCTGGGATACCCTACTCTCTTGGCCCTATGAGTGGCACAGTTCCTGCAGGGTTGGCCCAAAGTTCTActacaggatcggcccagagtcctacagggtcagcccagagtcctacaggatcggcccagagtcctacagggtcagcctag 1848 0.4161 MADYDGKEQKRRFAVLGISSILLVAMVAAVAVTINRGGNKGEEGDDESRVQTAQRNNVEMICNSTEYKETCKKSLEKASSDENADTKELIKAAFNASAVELLNHIKNSTLYKELAKDNMTRQAMDICKEVFDYAIDGVQKSIETLDKFEFIKLSEYVYDLKVWLTGSLSHQQTCLDGFENTNTKAGEKMAKAMNASLELSSNALDMINFISGLIKDLNISSLVGNNRRLLSSKEEALVDGYPSWVSEGQRRLLGLSSIKPNATVAKDGSGQFATLTDALKTVPPKNAQAFVIYVKAGVYKENVNVGMDMTHVTVIGDGPKKTRFSGSLNYKDGVQTFNSATFAVNGANFMAKDIGFENTAGSSKQQAVALLVTADQAVFYNCQMDGFQDTLFAQSQRQFYRDCTISGTIDFIFGDAFAVFQNCQLIVRNPLKGARCMVTAGGRVKANSASALVFQSCHFTGEPELASAEPKLAFLGRPWMPYSKVVIMDSQIENIFLPEGYEAWTANANKDTCTYYEYNNKGPGADTSKRVKWQGVKVITSTEANNYYPGKFYELANSTSRDAWITDAGIPYSLGPMSGTVPAGLAQSSTTGSAQSPTGSAQSPTGSAQSPTGSA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00387 615 Gene3D - 258 577 IPR012334 -
Gma09g00387 615 SMART PMEI_2 53 206 IPR006501 GO:0004857
Gma09g00387 615 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 208 IPR006501 GO:0004857
Gma09g00387 615 Pfam Plant invertase/pectin methylesterase inhibitor 57 206 IPR006501 GO:0004857
Gma09g00387 615 MobiDBLite consensus disorder prediction 581 615 - -
Gma09g00387 615 CDD PMEI-like_3 61 208 - -
Gma09g00387 615 Pfam Pectinesterase 261 552 IPR000070 GO:0030599|GO:0042545
Gma09g00387 615 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Gma09g00387 615 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Gma09g00387 615 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 212 IPR035513 -
Gma09g00387 615 SUPERFAMILY Pectin lyase-like 258 554 IPR011050 -
Gma09g00387 615 PANTHER PECTINESTERASE 6 579 - -
Gma09g00387 615 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Gma09g00387 615 MobiDBLite consensus disorder prediction 582 615 - -
Gma09g00387 615 PANTHER PECTINESTERASE 6 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00387 Gma-Chr9 3632105 3642990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00387 5 614 Carbohydrate Esterase AT3G05610 43.204 3.24e-178 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00387 K01051 - gmx:100784682 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00387 09 3632105 3642990 Gma09g00387 09 3632105 3642990 ECH
Gma17g00265 17 2157712 2160167 Gma09g00387 09 3632105 3642990 PCT
Gma09g00387 09 3632105 3642990 Gma17g00265 17 2157712 2160167 PCT