Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00375 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGTGTGAAGCGTGGCCGCAACCTCGCCGCGCAGGAACTATGGTCTGAGCTTGACCCTTTCTCTGACTTCCTTGGCTTCCACACCACCAATTCCAAAAACCAACCACCCCTGCAGAAAATTCCAGACAAAAAAGTGGTGTCATCATGTGAGAAGAAGAAGAAAAGCGTGGTGGGTGCAGAAAAGAAGAAGAGTGATAGTGGGCGAGCTCGTAAAAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCGGAGATAAGGGACCCACACAAGGGTGTTCGTGTCTGGCTCGGCACCTTCCCCACCGCCGAAGAAGCCGCCCAAGCCTACGACGACGCCGCCATACGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCGGCCACCACCATTTCCGCCGCCGCCGCTCCGCCACCTTCCAAAAAGCAACGCTGCCTCAGCCCTGACATCATCACTGAAGAAAGCAGCAGCAGCAGCTCACATTCCACCACTGGATCCACCGGCGAAAGCGGCGGAGGAAACGACGAACTCGACCTGAAACAAATTGAATGGTTTCTAGGTTTGGAGAATGAGCTGCCTGTTAGCAACAACATTGGTGCTGAGTGGGACAACATGGATGACCTGTGGATGCTGGACGACGTCGTTGTGCCCAACCGTCACTTAATTTACTAG 714 0.5462 MCGGAIISDFIGVKRGRNLAAQELWSELDPFSDFLGFHTTNSKNQPPLQKIPDKKVVSSCEKKKKSVVGAEKKKSDSGRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAAQAYDDAAIRIRGDKAKLNFPATTISAAAAPPPSKKQRCLSPDIITEESSSSSSHSTTGSTGESGGGNDELDLKQIEWFLGLENELPVSNNIGAEWDNMDDLWMLDDVVVPNRHLIY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00375 237 MobiDBLite consensus disorder prediction 165 185 - -
Gma09g00375 237 PANTHER EREBP TRANSCRIPTION FACTOR 1 159 - -
Gma09g00375 237 Gene3D AP2/ERF domain 84 143 IPR036955 GO:0003700|GO:0006355
Gma09g00375 237 MobiDBLite consensus disorder prediction 165 188 - -
Gma09g00375 237 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Gma09g00375 237 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Gma09g00375 237 PANTHER DNA-BINDING DOMAIN 1 159 IPR044808 GO:0003700|GO:0009873
Gma09g00375 237 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Gma09g00375 237 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Gma09g00375 237 CDD AP2 85 143 IPR001471 GO:0003700|GO:0006355
Gma09g00375 237 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Gma09g00375 237 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00375 Gma-Chr9 3533440 3535904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00375 1 229 AP2-EREBP Transcription Factor Family AT3G16770 44.186 2.15e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma09g00375 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00375 K09286 - gmx:100817253 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00375 09 3533440 3535904 Gma09g00375 09 3533440 3535904 ECH