Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00359 ATGAATCTCAGCCACGGCAAGGGATCCACTTCGAGTTCTCCTCTGAAAGCCGGAGACACCGTCTCCGACCAGTTCCCGGCGGGTCTCCGGGTACTGGTTGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGTGACGAAATGCAAGCGAGCGGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAATGGGTTTGATATCGTTTTAAGTGATGTGCATATGCCAGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCTGATGATGGAAAACAAGTTGTGATGAAAGGGGTGACACATGGTGCCTGTGATTACCTGATTAAACCTGTTCGGATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGATGAGAAAGAATGGTTTGAGAGATGTGGAGCAATCTGGTAGCATGGAAGAAGGAGATCGGCCTCCAAAGGGATCAGATGACGGAAATTACTCGTCTTCGGTGAATGAAGCCAAAAGCTCAAAGAAGAGGAGGGATGAGGACGAGGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGTTGTGAATCAACTTGGAATTGATAAGGCTGTTCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTTAGAAGGCTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAGCAACTCCTTCATGAGCTCACAAGAAGCAACATTTGGGGGAACCTCAATCAATGGAATTGATCTTCAAACCCTTTCAGCTGCTGGCCAGTTCCCATCACAAAGTCTAGCCAAGTTTCAAGCTGCTGGACTTGGCAGGACAACTGCCAAAGCAGGTATGCCTATGTCTCTATCCGATCAAAAGAACCTTTTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAAGGGTCACTACAACATTTAAGCAACAGTAAGCCAATAAACTTGCTTCATGGAATTCTTACCAACATGGAGCCAAAGCAACTTGCCAATTTGCACCAATCTACCCAACCCCTTGGTAGCTTGAATATGCGAGTCAATTCTCCTGCCACGCAGAACAAACCCTTGCTGATGCAGATGACTCAGTCTCAACCAAGAGGTCAGTTGCTAAGTGAAAATGCCAGTTCTCATGTAACCAGGTATCCGTCATCTTTGGTGCAGCCTACAGTACCAAATGGTATTTCTAGTGGTGTTTTGGGAAATGCAATTGCTGGAACCAGCAACATAACTACTACTTATAACCCTGTTCAACAAAACTCTTCATTGTTGAGTTTTCCCATGAACCAAACCAATGAAATGTCTGCCAGTAATTTCCATCTTAGAAGCACTCCAGGTATAACTAGTATCCCAAATAAAGGTATGTTTCATGAAGAAGGTACCTCTGGTGTTAAAGGATCTGGTGGATTTGTTCAAGGTTATGACATGTTTAATGACCTTCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACAGGCATGACATATGATGCTTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTGGTTCATCAGAGTTTTCCCTCTATGCAACAGACTGTACAAAATAGAGATACTACTTCAATTGGAAAAGCTATGTTCTCCACAGGTGAAGGCATGCATCAGAGTAGTCTCCAAAATATTGGTCAACACCACAATAACCTTCTTCTTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATCCTAGCTGTCAGATTAATAACCTCTTCTCTGACCAATATGGTCAGGAGGATCTTGTCAGTGCATTTCTGAAACAGCAAGAAGGCGTTGGAACAGCTGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCCAGTTTAG 2022 0.4332 MNLSHGKGSTSSSPLKAGDTVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRMRKNGLRDVEQSGSMEEGDRPPKGSDDGNYSSSVNEAKSSKKRRDEDEEGDERDDSSTLKKPRVVWSVELHQQFMAVVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLSNSFMSSQEATFGGTSINGIDLQTLSAAGQFPSQSLAKFQAAGLGRTTAKAGMPMSLSDQKNLFSFENPRLRFGEGSLQHLSNSKPINLLHGILTNMEPKQLANLHQSTQPLGSLNMRVNSPATQNKPLLMQMTQSQPRGQLLSENASSHVTRYPSSLVQPTVPNGISSGVLGNAIAGTSNITTTYNPVQQNSSLLSFPMNQTNEMSASNFHLRSTPGITSIPNKGMFHEEGTSGVKGSGGFVQGYDMFNDLHHQKSHDWDLTNTGMTYDASQHANPLQGNIDVSPSVLVHQSFPSMQQTVQNRDTTSIGKAMFSTGEGMHQSSLQNIGQHHNNLLLDNSVRVKAERIPDPSCQINNLFSDQYGQEDLVSAFLKQQEGVGTAENEFDFDGYSLDNIPV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00359 673 CDD REC_typeB_ARR-like 31 145 - -
Gma09g00359 673 Gene3D - 29 206 - -
Gma09g00359 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 643 IPR045279 GO:0009736
Gma09g00359 673 MobiDBLite consensus disorder prediction 152 205 - -
Gma09g00359 673 MobiDBLite consensus disorder prediction 183 205 - -
Gma09g00359 673 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Gma09g00359 673 Gene3D - 207 266 - -
Gma09g00359 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Gma09g00359 673 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Gma09g00359 673 SUPERFAMILY CheY-like 28 148 IPR011006 -
Gma09g00359 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 643 - -
Gma09g00359 673 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Gma09g00359 673 PIRSF RR_ARR_type-B 4 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gma09g00359 673 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Gma09g00359 673 SMART REC_2 29 141 IPR001789 GO:0000160
Gma09g00359 673 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Gma09g00359 673 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00359 Gma-Chr9 3378768 3382785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00359 63 673 Response Regulator Gene Family AT3G16857 47.706 3.55e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma09g00359 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00359 - K14491 gmx:100781087 1326.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00359 09 3378768 3382785 Gma09g00359 09 3378768 3382785 ECH
Gma15g01353 15 12091578 12096326 Gma09g00359 09 3378768 3382785 GST
Gma17g00282 17 2283557 2287802 Gma09g00359 09 3378768 3382785 PCT
Gma09g00359 09 3378768 3382785 Gma17g00282 17 2283557 2287802 PCT