Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00319 ATGGCTTCAGCAAGCGGAGCGGCGAATTCCTCCGTTCCGCCGCCGCAAATCCACACCTCACGAACAAAGCTGAGCCACCACAGCAGCAACAACAACAACAACATCGACTCCATGAGCAAGGCCATCGCGCAGTACACGGAGGACGCGCGGCTCCACGCCGTCTTCGAGCAGTCCGGCGAGTCCGGGAGGTCCTTCAACTACTCCGAATCAATCCGCATCGCATCGGAATCCGTCCCCGAGCAGCAGATAACGGCTTACCTTGTCAAAATCCAGCGCGGCGGCTTCATCCAGCCCTTCGGCTCCATGATCGCCGTCGACGAGCCCTCCTTCCGCATCCTCGGTTACTCCGACAACGCCCGCGACATGCTCGGCATTACTCCGCAGTCCGTCCCTTCGCTCGACGACAAGAACGACGCCGCCTTCGCTCTCGGCACCGATGTCCGAGCCCTCTTCACTCACTCCAGCGCCTTACTCCTCGAAAAGGCCTTCTCCGCACGCGAAATTAGCCTCATGAACCCTATCTGGATCCACTCCAGAACCTCCGGGAAGCCTTTCTATGGAATCCTCCACCGAATTGACGTCGGAATTGTCATCGATTTGGAGCCTGCGCGTACGGAGGATCCTGCCCTCTCTATCGCTGGAGCTGTCCAGTCGCAGAAGCTCGCGGTTCGCGCGATTTCGCAGCTTCAATCTCTCCCCGGCGGTGATGTTAAGCTTCTCTGTGACACTGTTGTGGAAAGTGTTAGGGAATTGACGGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGAGAGGTTGTTTCTGAGAGTAAGAGGCCTGATTTGGAGCCTTACATTGGATTGCATTATCCTGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAAAATAGAGTTAGGATGATTGTGGATTGTCATGCTTCTGCTGTGAGGGTGGTGCAGGATGAGGCTCTTGTGCAGCCTTTGTGTTTGGTTGGGTCCACCCTTAGGGCACCTCACGGTTGTCATGCTCAGTATATGGCTAACATGGGCTCGATTGCGTCTTTGGTGATGGCAGTTATTATCAATGGGAATGACGAGGAAGGCGTTGGTGGTCGCAGTTCGATGAGGCTGTGGGGGCTTGTTGTCTGCCACCATACCTCTGCCAGGTGTATTCCTTTTCCCTTGAGGTATGCTTGTGAGTTTCTGATGCAGGCGTTTGGGCTGCAGTTGAACATGGAGCTTCAGTTGGCCGCGCAGTCGTTGGAGAAGCGGGTTTTGAGGACACAGACTCTGTTGTGTGATATGCTTCTTAGGGACTCGCCTACTGGCATTGTTACTCAGAGTCCTAGTATAATGGACTTGGTGAAGTGTGATGGGGCTGCCCTTTATTTCCAAGGGAACTATTATCCGTTGGGTGTGACTCCAACTGAAGCTCAGATTAGGGATATTATTGAGTGGTTGTTGGCCTTCCATGGAGATTCGACCGGTTTGAGTACTGATAGTCTGGGTGATGCTGGATATCCCGGGGCTGCCTCGCTTGGGGATGCAGTTTGTGGGATGGCGGTTGCTTATATTACAGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGCCAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGACAAGGATGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCGTTTTTAGAAGTGGTGAAAAGCCGTAGCTTGCCGTGGGAGAATGCGGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGTGACTCGTTTAAAGATGCTGAGCATAGAAATTCTAAGGCTGTTGTGGATCCCCATGTGTCAGAACAAGAGTTGCAAGGGGTGGATGAACTAAGTTCTGTGGCCAGAGAGATGGTTAGATTGATAGAAACAGCCACTGCTCCAATATTTGCTGTTGATGTCGATGGCCACGTAAATGGGTGGAATGCAAAGGTTTCAGAATTAACAGGACTCCCAGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCACGATCTTGTGTTTAAGGAGTCTGAAGAAACTATGAACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTGTTTTTAGTGGTGAATGCTTGCTCCAGCAAGGATTTTACAAATAATGTAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTAATGCACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGCCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGACGATAACACATGTTGCTTAGAGTGGAACACTGCAATGGAAAAGCTTACTGGTTGGGGCCGTGTGGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATTCAATAACAAAGTTCATGATTGTCTTACACAATGCACTTGGTGGACAAGATACAGATAAATTCCCTTTCTCATTTCTTGATCGGCACGGAAAGTATGTACAAACTTTCCTGACTGCAAATAAGAGGGTTAACATGGAGGGTCAGATCATAGGAGCTTTTTGCTTTTTGCAAATCATGAGTCCGGAACTTCAGCAGGCTCTTAAGGCACAGAGACAACAAGAAAAGAATTCCTTTGGTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAGTTAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACAAGCTTGACCAATGAGCAAAAGCAGTTTCTTGAGACTAGTGTTGCTTGTGAGAAGCAAATGTTAAAGATAATACGCGACGTTGATCTTGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGAAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTACTGTTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCAGTTTATGGTGATCAATTGAGGATTCAACAAGTGTTGTCTGATTTCTTGTTGAATATAGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTACGTCCAAGAATAAAACAAATCTCAGATGGGCTCACTCTTCTCCATGCTGAATTTAGAATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAAGACATGTTCAATAACAGTCGGTGGGGGACTCAAGAAGGTTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGCTAATGAACGGCGAAGTGCAGTATATCAGGGAGGCCGAACGGTGCTACTTCTATGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCTAAAAAGTGTTAA 3414 0.4733 MASASGAANSSVPPPQIHTSRTKLSHHSSNNNNNIDSMSKAIAQYTEDARLHAVFEQSGESGRSFNYSESIRIASESVPEQQITAYLVKIQRGGFIQPFGSMIAVDEPSFRILGYSDNARDMLGITPQSVPSLDDKNDAAFALGTDVRALFTHSSALLLEKAFSAREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVSESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYFQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHRNSKAVVDPHVSEQELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETMNKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFLVVNACSSKDFTNNVVGVCFVGQDVTGQKIVMHKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRVDVIGKMLVGEVFGSCCQLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMEGQIIGAFCFLQIMSPELQQALKAQRQQEKNSFGRMKELAYICQGVKNPLSGIRFTNSLLEATSLTNEQKQFLETSVACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFNNSRWGTQEGLGLSMSRKILKLMNGEVQYIREAERCYFYVLLELPVTRRSSKKC 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00319 1137 CDD HisKA 905 960 IPR003661 GO:0000155|GO:0007165
Gma09g00319 1137 SMART pas_2 89 158 IPR000014 -
Gma09g00319 1137 SMART pas_2 762 832 IPR000014 -
Gma09g00319 1137 SMART pas_2 631 698 IPR000014 -
Gma09g00319 1137 PIRSF Phytochrome_conventional 18 1136 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gma09g00319 1137 Gene3D - 419 592 IPR043150 -
Gma09g00319 1137 SMART HisKA_10 904 968 IPR003661 GO:0000155|GO:0007165
Gma09g00319 1137 SUPERFAMILY GAF domain-like 216 411 - -
Gma09g00319 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 90 204 IPR035965 -
Gma09g00319 1137 ProSitePatterns Phytochrome chromophore attachment site signature. 336 345 IPR013516 -
Gma09g00319 1137 Gene3D - 217 575 IPR029016 -
Gma09g00319 1137 Pfam GAF domain 237 414 IPR003018 GO:0005515
Gma09g00319 1137 PRINTS Phytochrome signature 151 173 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 251 270 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 336 357 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 444 464 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 529 548 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 562 580 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 725 742 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 PRINTS Phytochrome signature 745 765 IPR001294 GO:0006355|GO:0009584
Gma09g00319 1137 MobiDBLite consensus disorder prediction 1 32 - -
Gma09g00319 1137 TIGRFAM sensory_box: PAS domain S-box protein 636 751 IPR000014 -
Gma09g00319 1137 Gene3D PAS domain 89 339 - -
Gma09g00319 1137 SMART gaf_1 236 424 IPR003018 GO:0005515
Gma09g00319 1137 SMART HKATPase_4 1016 1129 IPR003594 -
Gma09g00319 1137 CDD PAS 774 882 IPR000014 -
Gma09g00319 1137 Pfam PAS fold 85 203 IPR013654 GO:0006355
Gma09g00319 1137 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
Gma09g00319 1137 CDD HATPase_Phy-like 1015 1127 IPR044767 -
Gma09g00319 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 236 404 IPR016132 -
Gma09g00319 1137 PANTHER PHYTOCHROME 21 1132 - -
Gma09g00319 1137 SUPERFAMILY GAF domain-like 422 599 - -
Gma09g00319 1137 Gene3D PAS domain 627 751 - -
Gma09g00319 1137 Gene3D PAS domain 776 885 - -
Gma09g00319 1137 ProSiteProfiles Histidine kinase domain profile. 911 1131 IPR005467 -
Gma09g00319 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 636 744 IPR035965 -
Gma09g00319 1137 Pfam PAS fold 763 882 IPR013767 GO:0006355
Gma09g00319 1137 Pfam PAS fold 632 747 IPR013767 GO:0006355
Gma09g00319 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 880 IPR035965 -
Gma09g00319 1137 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 979 1125 IPR036890 -
Gma09g00319 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1125 IPR003594 -
Gma09g00319 1137 Pfam Phytochrome region 427 601 IPR013515 GO:0006355|GO:0009584
Gma09g00319 1137 Gene3D - 886 967 - -
Gma09g00319 1137 CDD PAS 640 747 IPR000014 -
Gma09g00319 1137 Gene3D - 968 1134 IPR036890 -
Gma09g00319 1137 ProSiteProfiles PAS repeat profile. 629 700 IPR000014 -
Gma09g00319 1137 Pfam His Kinase A (phospho-acceptor) domain 909 968 IPR003661 GO:0000155|GO:0007165
Gma09g00319 1137 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 1132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00319 Gma-Chr9 2988233 2994902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00319 25 1129 Histidine Kinase Gene Family AT4G16250 74.439 0.0 1752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00319 K12121 - gmx:100799831 2250.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00319 09 2988233 2994902 Gma09g00319 09 2988233 2994902 ECH
Gma15g01305 15 11567251 11573392 Gma09g00319 09 2988233 2994902 GST