Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00282 ATGGCGACGGCGGAGGCAGCTTCTACTGGGCTTGGTCCCAGATATGCACCTGATGACCCTACCCTTCCTCAACCGTGGAAGGGGTTGATTGATGGCAGCACTGGTCTTTTATACTATTGGAATCCTGAAACCAATGTTACACAATACGAAAAACCGACGCCACCTGTGCCTGCGCCTGTGGCTTCTGCGCCGAGCTTGGCGCCTATACCAGCGGCTCATACAATGCAGCCTGGCGGGATGATGCAGCAGCACGGGCAGCAGATGCTGCAAGTACAATCCTCGCAACAGCATCTTGCCCAACAGCATGGCCAATCGATGCTGCCACAGCAGCAGCAGCAGCAGCAGAGTCCCCATATCGCACATGTTACTCAGCAGCAGTCCTCTCAGGGTGCCCAGGCAGCACAGCAGCAGAACCATCACGGGCAGCAAATGATGCAGCAGCCTCAAGGACATCAAGCCAGGCAGCCAATGATGCAACCGCAAGGACAGCAAATGCATCATCAGATGCCGCCGCAGGCGATCCATTCCCAGCATTTTGGGCAAGGAATGCCTCAGGATCAGGGCTCTCATATTGTACAACCACAAGCACATCAATTCACTTCCCAAAACATGCATTACATGTCGTATCAGCAAAATGTGATTACATCCAGGCAACCAAACTCCCAGCACATTCAGCCAAACATGGTATCACCCGGGCAACCTAACTCTCAGCAGGTTCAGCATAACATGCATGGTCAGCCCTTTGAAAACCAACAAACTACATATCCAAAGGTAGAGGTAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACATTCGCTGTCTCATTATCCACAAAGGAGTGCCTTGCCCGTTCAGAACAACCAGAACAATCCTGCTGAAGTTGGTTCTGGTCAAGTGCCTAATGTAGGTGTCAATGCTGGCCAACCACAGCAATTCAGGGCCTTATCTGGCAGTATGCAACAGTCACCCTCTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAGCCAGATGAGCCCAGGCATGATGCATGGTCATCCATCCAATGTCCACCCTGCTGGCCAAAAGATGGGTCACGAGGATAATTTACATGGTAGAGCAGGGAATGAGTATGACTATAATTCTACCAAAGATATGTCAACAATGGGTTGTCAGCAGCCAGATATAACTCCAATACCGATTCCAAGAAATCAGCAGGATATGAGGATTGGCAATGCTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTATTGCTGGGAATGCCGTGCCTAGCATGTTTGTTCCTCCAATAGGAGGACCTTCACCTCTCTCTACTAACCCTTCAATGAGGCCTCCTTATATGGGTTCTTCAGATGCTACTGATCTCTCACCGGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCTACGGGTGACAACATTCCACCTCCTTTCATGACATTTGACGCTACAGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGTTTCTCAAGTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTCGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCCTTCATTCTTCTTAGACAGCGACGTAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGATGAGGTCATCAAATTTGGCCGATCATCGCGAGTCTCTTGCACGTGCTTATACGGTGGAGCACCTAAAGCCCTTCAACTAAAAGAGTTAGACCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAACGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAGATTGTGAATGAGATTCCACCTCGCAGACAAACTCTCATGTACACGGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAATGTGGATGAGCTTGCTGCAAATAAAGCTATAACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAGATTCTCAGATCCCAAGAACGGGGTTCTAAGGTTATAATATTTTGTTCCACAAAGAGGTTATGTGACCAGCTTGCTCGTAGTATTGGCCGGACTTTTGGGGCTGCTGCAATTCATGGCGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCGACTGATGTTGCAGCACGTGGGCTTGATATTAAGGATATAAGGGTGGTGATCAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGGGCGGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTAGAGGGTGCTAATCAGCACGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGATCGAGGTGGGATGAGTCGATTTGACTCTGGTGGTGGTGGTGGTGGGCGCTGGGATACTGGTGGTCGTGgtggctttggtggtcgtggaggtggcatgagggatggcagttttggtggacgtggcagtggctttgggggacgtggtggcggcattagggatggtggttttggtggacgtggcggtggctttggtggtcgtggtggcatgagggatggAGGTAGTGGGCAAGGTGGGCGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCCGGTGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGATCGGTACAACATGGAGGGGCGTGGACAAGGTCGTGGACGTGGAAGATTTGACAATAGAAGAGATGTTTCTTCCAAAGGTAGAGGCAGAAGTCATAGTCGTAGCCCTGAAAGAGTCCGAACATGGGACTATagcaaaagtagcagcagaagtcgtagcagaagtagaagcaggagttggagcagGGGCCGTAGTCGAAGCCGCAGCTGGTCTCGTGGTCGTAGTCGCAGCTATAGCCGTAGTATTAGTCCACGTCGTAGTCGTAGCCGTAGCCGTGGTCGAAGTTACAGCCGCAGTCGTAGCCGCAGCCCCAGTTATGATAGGCGTGATAGGTCAGATCAACAACTTCCTGATCAAAAGGATATCAGGGCGCATGAAGTAGGAACTTCAGATCCAAGAATGCTTCCCGTGTCTTCTGGTCTTGGCACACAAGGGAATTCGTTTTTGGGAACTGAACAAGTGGAGCAGCAACCTATTGTTAGTAGCACTGATCCAGGTAATCCAGAAGCTGTAGCAGACCTTAGTCATCAATCAGTTTCTGATATTTAG 3498 0.4583 MATAEAASTGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPTPPVPAPVASAPSLAPIPAAHTMQPGGMMQQHGQQMLQVQSSQQHLAQQHGQSMLPQQQQQQQSPHIAHVTQQQSSQGAQAAQQQNHHGQQMMQQPQGHQARQPMMQPQGQQMHHQMPPQAIHSQHFGQGMPQDQGSHIVQPQAHQFTSQNMHYMSYQQNVITSRQPNSQHIQPNMVSPGQPNSQQVQHNMHGQPFENQQTTYPKVEVAEFKNGSQVGHSLSHYPQRSALPVQNNQNNPAEVGSGQVPNVGVNAGQPQQFRALSGSMQQSPSGSDLYYQHGPNFHSQMSPGMMHGHPSNVHPAGQKMGHEDNLHGRAGNEYDYNSTKDMSTMGCQQPDITPIPIPRNQQDMRIGNAPFQNVMPSGNGSGIAGNAVPSMFVPPIGGPSPLSTNPSMRPPYMGSSDATDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKDRGGMSRFDSGGGGGGRWDTGGRGGFGGRGGGMRDGSFGGRGSGFGGRGGGIRDGGFGGRGGGFGGRGGMRDGGSGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRYNMEGRGQGRGRGRFDNRRDVSSKGRGRSHSRSPERVRTWDYSKSSSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSRSRSRGRSYSRSRSRSPSYDRRDRSDQQLPDQKDIRAHEVGTSDPRMLPVSSGLGTQGNSFLGTEQVEQQPIVSSTDPGNPEAVADLSHQSVSDI 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00282 1165 MobiDBLite consensus disorder prediction 1034 1080 - -
Gma09g00282 1165 Pfam DEAD/DEAH box helicase 508 678 IPR011545 GO:0003676|GO:0005524
Gma09g00282 1165 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 862 IPR001650 -
Gma09g00282 1165 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Gma09g00282 1165 MobiDBLite consensus disorder prediction 865 1165 - -
Gma09g00282 1165 MobiDBLite consensus disorder prediction 1084 1111 - -
Gma09g00282 1165 Pfam Helicase conserved C-terminal domain 715 823 IPR001650 -
Gma09g00282 1165 SMART helicmild6 739 823 IPR001650 -
Gma09g00282 1165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 689 IPR014001 -
Gma09g00282 1165 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 484 512 IPR014014 GO:0003724
Gma09g00282 1165 SUPERFAMILY WW domain 17 56 IPR036020 GO:0005515
Gma09g00282 1165 MobiDBLite consensus disorder prediction 1 27 - -
Gma09g00282 1165 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 635 643 IPR000629 -
Gma09g00282 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 838 IPR027417 -
Gma09g00282 1165 MobiDBLite consensus disorder prediction 284 305 - -
Gma09g00282 1165 Gene3D - 460 693 IPR027417 -
Gma09g00282 1165 MobiDBLite consensus disorder prediction 1119 1147 - -
Gma09g00282 1165 SMART ultradead3 503 706 IPR014001 -
Gma09g00282 1165 MobiDBLite consensus disorder prediction 976 1033 - -
Gma09g00282 1165 MobiDBLite consensus disorder prediction 79 191 - -
Gma09g00282 1165 MobiDBLite consensus disorder prediction 50 191 - -
Gma09g00282 1165 CDD SF2_C_DEAD 703 832 - -
Gma09g00282 1165 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Gma09g00282 1165 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 296 966 - -
Gma09g00282 1165 Gene3D - 694 864 IPR027417 -
Gma09g00282 1165 SMART ww_5 21 54 IPR001202 GO:0005515
Gma09g00282 1165 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 296 966 - -
Gma09g00282 1165 Pfam WW domain 22 52 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00282 Gma-Chr9 2601854 2609820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00282 472 861 Eukaryotic Initiation Factors Gene Family AT3G19760 33.760 2.69e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00282 K12823 - gmx:100807830 1595.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01264 15 11104062 11111048 Gma09g00282 09 2601854 2609820 GST