Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00238 ATGGATTTTGCCATGGGAGCTGCTGGTGGGTCTGGTGATGATCAACACAATCAGAGCTTAAACAAAGGAAAAAAGACGACCACCTACCGTCGTCATAAAGAGGATCAAAGAACTAGGCTTGAAGAACTGTTCAGAAAGTGCCCAAATCCAGATGAAATCGAAAGACGTCAAATAGCCAAAGATCTCGGGCTTGAGCCAAAACAAGTAAAATTTTGGTTTCAGAATAAGAGGACTCAAAAAAAGACTATATCTGAGCGAGTGGATAATAATGTCCTTCGTGTTGAGAATGAAAGAATGCACAACGAAAACCTCGTACTGAGAGAGGCATTAAAGACTATAATTTGCCCTTCTTGTGGGGGTCCACACAATGAAGAAGAAAGGCGTGAACTTTGTCTAGAACAACTTCGTCTTGAAAATGCTCGTCTAAAAGCACAGCATGAGAAGTTGTCTAAGTTTCTTGTACAGCACATGGATAAACCAATTTTGGAACAAAACTTGGATTCCCCTATCAGAGGATCTTCGTCACATGGTCCATTACTAGGAAGTTCTCTAAGACTAAGAGCTGGAAGATCTCGTATGAATCTTGGTGCTTCAACAAGTCATGATTCATTTCAAGATGAAGAAGATACCATGTCAAGCCAAGCTGGGAGCAAAATAATAACACAGATGGAAAAGACAATGATGGCACATATTGCAGTGGCTGCTAAGGATGAATTGCTCAAGCTTTTGCGCACAAATGAGCCCTTATGGGTCAAGTCTTCAACTGATCAGAGATATGTTCTTCATCTTGAATGCTATGAAACGATCTTTCCAAGGATTAACCACTTCAAGAATTCCAAAGCGCGCGTAGAGTCATCAAAAGATTCGCGAATTGTCAGAATTAAGGCGAAGGAATTAGTTGACATGCTTTTAAATTCGGAAATTTGGGAAAATCTTTTCTCAAGAATTGTTACAAAAGCGCGCACAATCCAAGTACTTGAAAATGGTTCATTGGAAAATCGAAGTGGAGTTTTGTTGCTGATGCGTGAAGAGATGCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTCTACTTCCTTCGCTATTGTCACCAAGTTGAAGCTAATGTATGGGTTATAGCAGATGTTTCAGTTGACTGCATGAAAGAGAACAACCATGATCCTAACTGTTGGAGGTTTCCCTCTGGATGCATGATTCAGGGAATTTCTAATGGCATGTGCCAGGTTTCTTGGGTTGAACATGTTGAAGTGGATGAGAAGATCCAAACACATCATCTGTTTAAAGATCTTGTTAATAGAAATATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGCGAAAGATTTACTAGTCTTGAAGTTGAATACATACCTAATTATGACATCGGTGGAGTGATCACTACTCTAGGAGGAAGGATGAGTATGATGAAGTTTTCTCATCAAATGGTTAAAAGCTTCTATGGAATTTTAAATATGTCAAGTATCACTGACTTCCCACAACATTTAGCTGATGAGAATACTGGGATTAGGATTTGTGCTCGAAAAGTCACAAACTCAAATCAATCAAATCCCAATATTATAATCACTGCTACTACATCTTTCCGACTTCCTTTGCCTTCTCAAAATGTTTTTGACTTCTTTAGGGATCCAATAAGACGTGTTAAGGTTTAG 1683 0.3922 MDFAMGAAGGSGDDQHNQSLNKGKKTTTYRRHKEDQRTRLEELFRKCPNPDEIERRQIAKDLGLEPKQVKFWFQNKRTQKKTISERVDNNVLRVENERMHNENLVLREALKTIICPSCGGPHNEEERRELCLEQLRLENARLKAQHEKLSKFLVQHMDKPILEQNLDSPIRGSSSHGPLLGSSLRLRAGRSRMNLGASTSHDSFQDEEDTMSSQAGSKIITQMEKTMMAHIAVAAKDELLKLLRTNEPLWVKSSTDQRYVLHLECYETIFPRINHFKNSKARVESSKDSRIVRIKAKELVDMLLNSEIWENLFSRIVTKARTIQVLENGSLENRSGVLLLMREEMHVLSPLVPSREFYFLRYCHQVEANVWVIADVSVDCMKENNHDPNCWRFPSGCMIQGISNGMCQVSWVEHVEVDEKIQTHHLFKDLVNRNIAYGAERWLLELQRMCERFTSLEVEYIPNYDIGGVITTLGGRMSMMKFSHQMVKSFYGILNMSSITDFPQHLADENTGIRICARKVTNSNQSNPNIIITATTSFRLPLPSQNVFDFFRDPIRRVKV 560
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00238 560 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 559 - -
Gma09g00238 560 MobiDBLite consensus disorder prediction 1 35 - -
Gma09g00238 560 SUPERFAMILY Bet v1-like 222 453 - -
Gma09g00238 560 Pfam START domain 231 452 IPR002913 GO:0008289
Gma09g00238 560 Pfam Homeodomain 29 81 IPR001356 GO:0003677
Gma09g00238 560 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Gma09g00238 560 Gene3D - 230 453 IPR023393 -
Gma09g00238 560 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 559 IPR042160 -
Gma09g00238 560 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Gma09g00238 560 ProSiteProfiles START domain profile. 221 455 IPR002913 GO:0008289
Gma09g00238 560 SMART HOX_1 25 87 IPR001356 GO:0003677
Gma09g00238 560 Coils Coil 132 152 - -
Gma09g00238 560 SUPERFAMILY Homeodomain-like 11 82 IPR009057 -
Gma09g00238 560 SMART START_1 230 452 IPR002913 GO:0008289
Gma09g00238 560 CDD homeodomain 30 81 IPR001356 GO:0003677
Gma09g00238 560 CDD START_ArGLABRA2_like 225 451 - -
Gma09g00238 560 Gene3D - 7 82 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma09g00238 Gma-Chr9 2144502 2152186 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00238 7 560 Homeobox Transcription Factor Family AT3G03260 38.256 5.31e-131 391
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma09g00238 START 7.6e-34 CL0209
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00238 K09338 - gmx:100794552 1093.18