Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00219 ATGCTCAAGGAAGAGCACATTAGGGTTTTTGAAGACTCGCCTTTTGTGGCAGCTACGacacaacacaacacaacacaacacaacacaGTCCTAAGTTGTAAGAAACACTCTCTTCTCCTTTCTCACTATTGTTCTGTTACTGTTTTTTGCAGCAACACTTCAGTTCAATTAACGAACTACACCACTTTCTTTCTCTTCTTCGACTGCTCTGTAACCGAAAACCTCCCTTTCCCAGTTTCGAATCTTTTGTTTCTGCCTTTGGTTACTGTTTTTCCGAGCCATGCTATTCATTATTGTCCTTCGAATCGGATTGGTAACAAGGAATTTATGTGTGTAGATTGGGACACTGTATTGCATGTAAATCAGGAAATCATGACTTCTACTCATGACCTCTCAGATAATGAAGCTGATGACCAGCAGCAGTCGGAATCACAAATGGAGCCTTTATCTGCAAATGGAATTTCTTATGCAGGTATTGCTACTCAGAATGTTCAGTATGCAACACCTTCACAGCTTGGAACTGGGCATGCTGTGGTACCGCCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAGGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGCATCAACTGACGAATCACAGTCCACTATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAA 987 0.4083 MLKEEHIRVFEDSPFVAATTQHNTTQHNTVLSCKKHSLLLSHYCSVTVFCSNTSVQLTNYTTFFLFFDCSVTENLPFPVSNLLFLPLVTVFPSHAIHYCPSNRIGNKEFMCVDWDTVLHVNQEIMTSTHDLSDNEADDQQQSESQMEPLSANGISYAGIATQNVQYATPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00219 328 ProSitePatterns NF-YA/HAP2 subunit signature. 237 257 IPR018362 GO:0003677|GO:0016602
Gma09g00219 328 Gene3D - 232 293 - -
Gma09g00219 328 MobiDBLite consensus disorder prediction 248 273 - -
Gma09g00219 328 PRINTS CCAAT-binding transcription factor subunit B signature 266 289 IPR001289 GO:0003700|GO:0006355
Gma09g00219 328 PRINTS CCAAT-binding transcription factor subunit B signature 235 257 IPR001289 GO:0003700|GO:0006355
Gma09g00219 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 234 289 IPR001289 GO:0003700|GO:0006355
Gma09g00219 328 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Gma09g00219 328 MobiDBLite consensus disorder prediction 250 266 - -
Gma09g00219 328 MobiDBLite consensus disorder prediction 303 322 - -
Gma09g00219 328 SMART cbf3 231 292 IPR001289 GO:0003700|GO:0006355
Gma09g00219 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 125 309 IPR001289 GO:0003700|GO:0006355
Gma09g00219 328 ProSiteProfiles NF-YA/HAP2 family profile. 232 292 IPR001289 GO:0003700|GO:0006355
Gma09g00219 328 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 125 309 - -
Gma09g00219 328 MobiDBLite consensus disorder prediction 286 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00219 Gma-Chr9 1977387 1983856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00219 124 328 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.072 9.22e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma09g00219 CBFB_NFYA 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00219 K08064 - gmx:100784325 402.519