Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00109 ATGGTTTCGCTGGAGGAATCTCGCTCTAATTCGAGCCGTTTCCCCTTGGCGAGGAGTTACCAGTACCACTCCTCGGTTTCGTCCAAAACGCAGCGTCACATCGGAAGGTCCATGCGCACGATACGCTCCAGTTTCTTCCAGGACGACAACAGCAGCAGCTGCTGCTCCTTCACCGAGAAATCCACGTGTCTCTCGGAGAACCTCACCGACTCCGTCGTCGACCTCCGTCTCGGCGAGCTCGCGCTTCGGAACAGCAAATCGGTGAAATCCTCTCCGGCTGAGGAGGACCTCCTCGATTTGTCGCAGGCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTACAGCGCCTCGCGACGCTGCCGTCGCCGAAGAAGAGCGACGTCTCCGGCGATAATGAGGCGCCGGAGCTGGAGATTGAGCCCTGCATGGGGTTCCTGCAGAGGGAGAACTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAAATGTGCATCGACGGCCTCCAGTCGCAGTCGGTAGCGGTGAAGCGCTCCGCGGCGGCGAAACTCCGGCTACTAGCCAAAAACCGCGCCGACAATCGCGTTCTGATCGCGGAGTCGGGCGCCGTCCCCGTCCTCGTTCCGCTTCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCTGTCACCGCACTGTTAAACCTCTCTCTCCACGAGGACAACAAAATGCTGATAACCAATGCCGGAGCAGTTAAGTCTCTGATTTATGTTCTAAAAACCGGAACTGAAACTTCGAAGCAGAACGCGGCCTGTGCGCTCTTAAGCCTTGCATTGGTGGAAGAGAACAAGGGCTCGATCGGGGCTTCCGGTGCGATACCGCCGCTGGTTTCTTTGCTTCTGAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAGCTGTGTTCTGTTAGGCAGAACAAGGAGAGAGCGGTGAGTGCCGGCGCAGTGAAGCCGCTGGTGGAGCTCGTGGCGGAACAGGGGAACGGCATGGCGGAGAAGGCCATGGTGGTGCTGAACAGCCTGGCGGGGATTCAGGAAGGGAAGGACGCGATTGTGGAAGAAGGCGGAATTGCTGCTCTTGTGGAAGCTATTGAGGATGGGTCTGTGAAAGGGAAGGAATTCGCGGTTTTGACCCTTCTTCAGCTCTGTGTTGATAGTGTCATAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGACTGGGAGTGCTCGAGCTAAGCACAAGGCTGAAACGCTTCTTCGATATTTGAGGGAACCAAGACAAGAGGCAGCATCTACTTCAAGTTCTTAG 1377 0.5694 MVSLEESRSNSSRFPLARSYQYHSSVSSKTQRHIGRSMRTIRSSFFQDDNSSSCCSFTEKSTCLSENLTDSVVDLRLGELALRNSKSVKSSPAEEDLLDLSQAFSDFSACSSDISGELQRLATLPSPKKSDVSGDNEAPELEIEPCMGFLQRENFSTEIIESISPEDLQPTVKMCIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKGSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVINRGFLVREGGIPPLVALSQTGSARAKHKAETLLRYLREPRQEAASTSSS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00109 458 PANTHER U BOX DOMAIN-CONTAINING 6 454 - -
Gma09g00109 458 Gene3D - 151 313 IPR011989 -
Gma09g00109 458 Gene3D - 314 458 IPR011989 -
Gma09g00109 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Gma09g00109 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 454 - -
Gma09g00109 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Gma09g00109 458 SUPERFAMILY ARM repeat 167 445 IPR016024 -
Gma09g00109 458 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Gma09g00109 458 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Gma09g00109 458 SMART arm_5 324 364 IPR000225 GO:0005515
Gma09g00109 458 SMART arm_5 365 405 IPR000225 GO:0005515
Gma09g00109 458 SMART arm_5 406 447 IPR000225 GO:0005515
Gma09g00109 458 SMART arm_5 242 282 IPR000225 GO:0005515
Gma09g00109 458 SMART arm_5 283 323 IPR000225 GO:0005515
Gma09g00109 458 SMART arm_5 201 241 IPR000225 GO:0005515
Gma09g00109 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00109 Gma-Chr9 889386 892115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00109 111 450 U-box Gene Family AT2G23140 45.170 5.40e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00109 - - gmx:100806768 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01091 15 9204050 9206709 Gma09g00109 09 889386 892115 GST
Gma17g00070 17 664257 667061 Gma09g00109 09 889386 892115 PCT