Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00081 ATGAGTCAACTCGGCGCCGTGTTGCGGACTCAGAGGGAGCCCAGGAGGAGTACCATTCTGGGTTTGTTGACGGAGCAAATGGACGGCGTTGATAGTGGGACCCGCAGGAGGCGCAGCTTCAAGGAACGCTTCGGATTCATCGGCATGGGGTGCTGTGGGGCCACCTGGGGCTTCCGTTCCGACGCGCTAAGTGTCACCCAAGGAGAACAGCAACAGCAGGAAACGGATCCAGAGTGCGTGGGTCCAGCAGGTTTGGGTTCGGGTATGAATCTCGCGGCGGCGTTAGCGGCGGAGAGGCAGCTCCGGGGGCCGCAGGAGGAGGCAGTGAGAGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGACCGAGGCGGAGAAGGAGAAGGAGAAAGAGAAAGAGGAGAATGTTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCAGCGTTCATCCCATGTGGACACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTTAATCGAGGCTCTTGTCCCCTTTGCAATCGCTCCATCCTCGAGATTCTCGACATTTTCTAG 591 0.5922 MSQLGAVLRTQREPRRSTILGLLTEQMDGVDSGTRRRRSFKERFGFIGMGCCGATWGFRSDALSVTQGEQQQQETDPECVGPAGLGSGMNLAAALAAERQLRGPQEEAVRAPGTPWRVSLMRLLEETEAEKEKEKEKEENVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00081 196 CDD RING-HC 148 185 - -
Gma09g00081 196 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Gma09g00081 196 Coils Coil 117 144 - -
Gma09g00081 196 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 196 - -
Gma09g00081 196 SUPERFAMILY RING/U-box 136 193 - -
Gma09g00081 196 SMART ring_2 148 185 IPR001841 -
Gma09g00081 196 PANTHER OS01G0917900 PROTEIN 17 196 - -
Gma09g00081 196 Pfam Zinc finger, C3HC4 type (RING finger) 145 190 - -
Gma09g00081 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00081 Gma-Chr9 644312 645652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00081 19 196 C3H Transcription Factor Family AT4G22250 56.701 9.47e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00081 - - gmx:100804292 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01060 15 8943702 8944646 Gma09g00081 09 644312 645652 GST
Gma17g00088 17 799449 800399 Gma09g00081 09 644312 645652 PCT