Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00060 ATGGCAACTCTAACCACTCTTCTAGTAACTTTGTACTTTCTAGTACCTGCCTTAGCTTCAACACCGAATAGAGATTCAACAAAGGAGTTCAACGCTCTCTCTCCTATTTCAAGCTATATCAACAAAACTCCTGAGGATGTTGTCATCATGAACACAATAGACTCATGTTGGCGAGCCAAAACAAATTGGGCTTCAAACCGCAAAGCCTTGGCAGATTGTGCAATTGGCTTTGGCAAAGAAGCCATTGGAGGAAAGTTTGGTGATATATACGAAGTCACTGACCCTTCTGATGACCCTGTGGACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACCTTCGCCAAGGACATGGATATTAGGCTCAAGAACGAGCTTATGGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATTGCAAATGGGGCTTGCATTACGATACAAGGTGTTAGCCATGTCATAGTGCATGGAATTAGTATTCATGATTGTGAACCGGGAAAGGGTGGCATGGTGAGGAGTAGTCCTGAGCATGTTGGGTATCGTGAAGGGTCTGATGGAGATGCCATTAGCATATTTGCTTCCTCTAATGTATGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCTGTCACCATCTCTAACAATTACTTCACCCAGCACGACAAAGTGATGCTGCTAGGACACAGCGATGAATACACCGCGGATAAAGTAATGAGGGTAACAGTAGCTTTCAACCGCTTTGCCAGTGGCTTAATAGAAAGAATGCCAAGGGTGAGATTTGGTTATGCCCATGTAGTCAACAACCTGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTTTTAGTGAAGGGAACTATTTTACGGCTTCAAATGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAAGTAGTGAAAAGTGGAACAATTGGAAATGGAGGAGTTTTCGGGATGAATTTATAAACGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGCACGCCAATATATTCAGCTGCTCAAAGTTTTATCGCGGCCCAGGCATCTATGGTGCCCTTATTAACTCTCAATGCTGGGCCACTCAATTGTGTTGTTGACAAAGCTTGTTAA 1194 0.4439 MATLTTLLVTLYFLVPALASTPNRDSTKEFNALSPISSYINKTPEDVVIMNTIDSCWRAKTNWASNRKALADCAIGFGKEAIGGKFGDIYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFAKDMDIRLKNELMVNSYKTIDGRGAKVEIANGACITIQGVSHVIVHGISIHDCEPGKGGMVRSSPEHVGYREGSDGDAISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTQHDKVMLLGHSDEYTADKVMRVTVAFNRFASGLIERMPRVRFGYAHVVNNLYDEWLMYAIGGSADPTIFSEGNYFTASNDSAAKQVTKRESSEKWNNWKWRSFRDEFINGAYFVPSGYGSCTPIYSAAQSFIAAQASMVPLLTLNAGPLNCVVDKAC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Gma09g00060 397 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Gma09g00060 397 Pfam Pectate lyase 128 315 IPR002022 -
Gma09g00060 397 Gene3D - 50 390 IPR012334 -
Gma09g00060 397 SUPERFAMILY Pectin lyase-like 50 388 IPR011050 -
Gma09g00060 397 PANTHER PECTATE LYASE 18-RELATED 43 396 IPR045032 GO:0030570
Gma09g00060 397 PANTHER PECTATE LYASE 43 396 - -
Gma09g00060 397 SMART amb_all 124 321 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00060 Gma-Chr9 471547 473193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00060 1 397 Polysaccharide Lyase AT4G22080 65.327 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00060 K01728 - gmx:100803229 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01038 15 8749405 8750864 Gma09g00060 09 471547 473193 GST
Gma17g00099 17 901158 903187 Gma09g00060 09 471547 473193 PCT