Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00056 ATGGATTGGACTAGAGGCCACACCCTCGGCCGCGGCTCCACCGCGGCCGTCTACATCGGGGAGTCCCACCGGTCCGGTGAAGTGTTTGCCGTGAAGTCTGCGGAGCTCCACCGGTCGGAGTTCCTCAAAAGGGAGGAGAGGATTCTTTCAACACTGAAATGTCCTCAAATTGTGGCCTACCGAGGCTGTGACAACACGTTCGAGAACGGCGTGCAGTGGTTCAACATGTTCATGGAGTACGCGCCTCACGGGACCCTGGCGGAGCGCGGTGGCGGGATGGAAGAAGCGGTGGTGGGGTCCTGCACGCGCCAAATTCTGCAGGGCCTGAACTACCTTCACTCCAATGGGATAGTGCATTGCGACGTGAAGGGGCAGAACGTGTTGGTGACGGAGCAAGGGGTGAAAATTGCGGACTTTGGTTGCGCTCGGAGGGTGGAGGAGTCATCGTCGGTGATCGCCGGCACGCCGAGATTCATGGCACCAGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCACTTGGGTGCACTGTGCTGGAGATGATCACCGGGACGCCGCCGTGGCAAGGCGGCGGAGACCCGGCGGCGGTGGTTTATAGGATTGGATTCTCCGGCGAGTCGCCGGAGATACCTGGTTATGTGTCGGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGAGCCCGGTGAAAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAGTGCACGGAATTGAAGTTGTTGGTGTTGGATTCGGACACTCCCACTGGTGTGTTGGAACGAGGTTTTTGGGATTCACTGGAGACAGCTCAGCATGAAGCACTTGATTGTCCCTCTCCTAGGGACAGAATTCGTAGGTTGTTTTCGGATGAGCCTGTTTGGGCATCGAACGATGACGAATGGGTCACTGTGAGAGGCAATGAGATCCATGACATACATTTGGAGGCTGAGGAATCAACTGCAGCTGAATTGAGTATTAGTGATAATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCACCAGAGAATCATTGTTGTCAGCTTGTGAAGTGTTTCAAAAGCATTGA 1101 0.5559 MDWTRGHTLGRGSTAAVYIGESHRSGEVFAVKSAELHRSEFLKREERILSTLKCPQIVAYRGCDNTFENGVQWFNMFMEYAPHGTLAERGGGMEEAVVGSCTRQILQGLNYLHSNGIVHCDVKGQNVLVTEQGVKIADFGCARRVEESSSVIAGTPRFMAPEVARGEQQGFPADVWALGCTVLEMITGTPPWQGGGDPAAVVYRIGFSGESPEIPGYVSEQGRDFLGKCLKREPGERWSVEELLGHGFVKECTELKLLVLDSDTPTGVLERGFWDSLETAQHEALDCPSPRDRIRRLFSDEPVWASNDDEWVTVRGNEIHDIHLEAEESTAAELSISDNDCYLRGRNCDCRTRESLLSACEVFQKH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00056 366 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g00056 366 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g00056 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Gma09g00056 366 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 332 - -
Gma09g00056 366 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gma09g00056 366 PANTHER MAP KINASE KINASE KINASE 1 332 - -
Gma09g00056 366 Gene3D Transferase(Phosphotransferase) domain 1 2 282 - -
Gma09g00056 366 CDD STKc_MAPKKK 2 249 - -
Gma09g00056 366 SUPERFAMILY Protein kinase-like (PK-like) 2 281 IPR011009 -
Gma09g00056 366 Pfam Protein kinase domain 4 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00056 Gma-Chr9 434870 437325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00056 1 277 MAP Kinase Kinase Kinase AT2G32510 52.759 1.52e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma09g00056 Pkinase 1.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00056 K20716 - gmx:100802174 724.161