Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00016 ATGTCTGAGTGTGGCTGTTCCGAGTCAGACCCTTCGTGTGGTTGTTGGTCGAGCAGCAGCAGCAGATCTGTGGCCTCAACTGAACTGAAGCTGTACCGAGCATTCATCTTCTGTGTTCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTATCTCTTCTACCTCCGACCGCGAACTAGGCTCCATTGGATTTCACACTTTCGCCTTCCCAGCAACAACAACCGCAATAATGCCATCTCCACATTGGGTTTGGGCTTGAACAAAGAACTTAGAGAGATGCTGCCCATTATTGTCTACAAGGAAAGCTTCTCCGTCAAAGATACTCAATGCTCAGTGTGCCTTTTGGACTACCAGGCAGAGGATAGGCTGCAACAAATACCTGCATGTGGCCATACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCATACCACCTGTCCTCTCTGCCGCTTCTCCCTACTAACCACTGCTAAATCTTCAACGCAGGCATCCGATATGCAGAACAATGAAGAAACACAAGCCATGGAATTCTCTGAATCAACATCTCCTAGGGATCTAGAAACCAATGTCTTCCAAAATGTCTCTGGAGAAGTTGCCATCAGCACTCACTGCATTGATGTTGAAGGGCAAAATGTGCAAAACAATCAATAG 660 0.4667 MSECGCSESDPSCGCWSSSSSRSVASTELKLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWISHFRLPSNNNRNNAISTLGLGLNKELREMLPIIVYKESFSVKDTQCSVCLLDYQAEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTTAKSSTQASDMQNNEETQAMEFSESTSPRDLETNVFQNVSGEVAISTHCIDVEGQNVQNNQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00016 219 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gma09g00016 219 Pfam Ring finger domain 110 153 IPR001841 -
Gma09g00016 219 SUPERFAMILY RING/U-box 95 158 - -
Gma09g00016 219 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 17 176 - -
Gma09g00016 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 159 IPR013083 -
Gma09g00016 219 SMART ring_2 111 152 IPR001841 -
Gma09g00016 219 CDD RING-H2_EL5_like 110 153 - -
Gma09g00016 219 MobiDBLite consensus disorder prediction 165 186 - -
Gma09g00016 219 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00016 Gma-Chr9 125367 129183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00016 21 157 C3H Transcription Factor Family AT4G10150 61.111 3.29e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00016 K19039 - gmx:100794211 396.356