Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00006 ATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGCTGGGTCAACACGCCGCCGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGTGAGGAGTTGTTATGGGAATTGTTTGTTCAGGCTGGTCCAGTTGTTAATGTCTATGTTCCAAAGGATAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAATCTTTTCATTGGCAATCTAGATCCTGATGTAGATGACAACCTCAACCAAATTCAAGACTTATACATGAGTGTCACCAAATTATACACGAAGTCGTCGACAACCTCAACCGTGGAATTGCCACCACCAATCTCAGCCTCAGAAGCCCTTATAGTCAACACATTATGCGCGCTTGGCTTGGCCTTCGCCTTCTGGATTGCGAACACTGTCTACTCCATCGAACTCGTTACTCATCCTTCTCTCACACTCTTCTTCATCTGGGTACTCTCAATTCAATTTTCTTTTCGTTTTCTACTTTTCATATACCTGCGAGCTGTTGGGAGAGGGGTTCTAGGAGTGCCTGTTGGGGCACTACTGAATTTTTTAGGAGCTATTGCTGTGGGGGCGCCTGTTACATTTCAGTATCTTCCCAAGACTGTAAATTGGGCTCTTATGATGTCTGTGTTCACAACAATTCCAGCGTCATGTGTTCTTGGTTCATCGTGGGCTGACTGGCGACGTATATTTGCACAAACAAAGCCAAAAGGATCTATAGAGTACCTGATTTGTTTACCAGCACATGGAGCAGTTATTGGAGCATGGTTTGGGGCTTGGCCAATGCCTCTTGACTGGGAGAGGCCATGGCAGGAATGGCCCATTTCTGTGAGCTATGGGACCGTAGCTGATCACAACATATCAAAAGAGAATGAAGTGCTAGTAGAAGCATCTGATTATACTAATTGTGGGTGA 1065 0.4563 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDDNLNQIQDLYMSVTKLYTKSSTTSTVELPPPISASEALIVNTLCALGLAFAFWIANTVYSIELVTHPSLTLFFIWVLSIQFSFRFLLFIYLRAVGRGVLGVPVGALLNFLGAIAVGAPVTFQYLPKTVNWALMMSVFTTIPASCVLGSSWADWRRIFAQTKPKGSIEYLICLPAHGAVIGAWFGAWPMPLDWERPWQEWPISVSYGTVADHNISKENEVLVEASDYTNCG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00006 354 CDD RRM1_SF3B4 28 100 IPR034158 -
Gma09g00006 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Gma09g00006 354 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 126 - -
Gma09g00006 354 PANTHER TRANSFORMER-2-RELATED 1 126 - -
Gma09g00006 354 SMART rrm1_1 26 99 IPR000504 GO:0003723
Gma09g00006 354 Gene3D - 16 110 IPR012677 -
Gma09g00006 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Gma09g00006 354 Pfam GPI biosynthesis protein family Pig-F 214 333 IPR009580 GO:0005789|GO:0006506
Gma09g00006 354 SUPERFAMILY RNA-binding domain, RBD 25 126 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00006 Gma-Chr9 63592 68576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00006 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 3.65e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00006 K12831 - gmx:100784506 635.95