Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03287 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCAAGGAAACAACACTGCTGCCAGCTCTCACCTTATTCTTCCACAACCAATACAACCACCACAGCCTCCGCCATCGCAGCCTCATGGACTCGGTGGTAGCACTACCGCCGGGTCCATCAGGCCCGGTTCGATGGCGGATAGGGCAAGGATGGCCAACATACCTATGCAGGAAGCTCAACAAAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTACTGGACACGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAACAACACCAGGTCTCCGGCAAACTCCGATCGCCAAACCGCGAGTGCCGGTTCGGCTTCCACCACCAGTGGCTCCTCCTCTGCTGACTTGGTGGCCGGCCTCGGCGGTGGCACCGGAGTGCCACCGTCGCTTAGATTCATGGCTCCATTGCATCAACTTGGTGACCACCACCACCACCTTGGTGGTGGTGGAGGAGAAATAGGGTTAAGCTATGGCTTGAACTATGGCGCAATTTCGGGTCCAATGGGAGGAATAGGAGACTTGAATTTCCATATAGGAGGCAGTTTGAGTGGTGGTGGTTGTTCTATGTTGTCTGGTTTGGAACAATGGAGGGTTCCACAAACTCACCAATTTCCCTTCTTGTCTGGCTTGGAAGCTACTTCATCACATGGGTTGTACCCTTTTGAGGGTGCTAGTGGTAGTGATGGCTACGGTAGCACTCCCATTAAGGTTTCAACTTCTGGGGTTATGTCTCAGCTTGCTTCTGTGAAAATGGAAGACAATCATCATCATCATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGGGTCAATAATAACCCTAGCACAAATGAGCAATATTGGAGTGGTGGTGGTGGTGCCACTTCTGCTTGGACTGATCTTTCTGCTTTCAGCTCTTCTTCCACTACTAGTAATAACGCACTATAG 1104 0.519 MVYTSIPAYIDPANWQQQQPNHQQQGNNTAASSHLILPQPIQPPQPPPSQPHGLGGSTTAGSIRPGSMADRARMANIPMQEAQQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGNNTRSPANSDRQTASAGSASTTSGSSSADLVAGLGGGTGVPPSLRFMAPLHQLGDHHHHLGGGGGEIGLSYGLNYGAISGPMGGIGDLNFHIGGSLSGGGCSMLSGLEQWRVPQTHQFPFLSGLEATSSHGLYPFEGASGSDGYGSTPIKVSTSGVMSQLASVKMEDNHHHHHQELGLPRQFLGVNNNPSTNEQYWSGGGGATSAWTDLSAFSSSSTTSNNAL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03287 367 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
Gma08g03287 367 MobiDBLite consensus disorder prediction 37 66 - -
Gma08g03287 367 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Gma08g03287 367 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Gma08g03287 367 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 362 IPR045174 GO:0003700|GO:0006355
Gma08g03287 367 MobiDBLite consensus disorder prediction 138 173 - -
Gma08g03287 367 MobiDBLite consensus disorder prediction 128 178 - -
Gma08g03287 367 MobiDBLite consensus disorder prediction 309 343 - -
Gma08g03287 367 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 362 - -
Gma08g03287 367 MobiDBLite consensus disorder prediction 325 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03287 Gma-Chr8 49628338 49629780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03287 1 359 C2C2-Dof Transcription Factor Family AT2G37590 40.909 5.78e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma08g03287 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03287 - - gmx:100796820 624.78