Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03279 ATGTCAGGGCAGAGAAGGTCATCAAGAGCTTCAAAGTTCACTGAGAATGAGATTAATGAACTTGTGTCTAGGTTACAagttctgcttccgcaagtcaaccaaagaggaaactcgaggCAATCAGCGTCCAAGATTTTGCAGGAAACTTGTTGTCATATTAGGAGGCTGCAGGAAGAGGTGGAACAGCTCAGTGAGAGGCTATCAGAGATCCTGGATTCTGCGGATATCAGTGACATTGACCGAAGAACTTTACAAAACTTTCTGCAACAATATTAA 276 0.3587 MSGQRRSSRASKFTENEINELVSRLQVLLPQVNQRGNSRQSASKILQETCCHIRRLQEEVEQLSERLSEILDSADISDIDRRTLQNFLQQY 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03279 91 Gene3D - 15 90 IPR036638 GO:0046983
Gma08g03279 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 70 IPR036638 GO:0046983
Gma08g03279 91 Coils Coil 46 73 - -
Gma08g03279 91 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Gma08g03279 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 56 IPR011598 GO:0046983
Gma08g03279 91 PANTHER DNA BINDING PROTEIN 1 90 - -
Gma08g03279 91 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03279 Gma-Chr8 49547713 49549323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03279 6 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 50.704 6.50e-17 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g03279 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03279 - - gmx:100810266 105.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01595 18 44445897 44448018 Gma08g03279 08 49547713 49549323 GST