Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03277 ATGGTGGTGATAGAGCAGGAAGAGAGCGAGCATCGAAACGCGAACCCCTCCAACGACGCTTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTCGCCAGTGACGGCGACGACGGTGGAGCCGGCAGCCCGGAAgaacagaatcacatcgaacagagtcataccgaacagaatcacaccgaacagagtcacaccgaGAAACACCAGCAGCAGCAGCAGACGGAGCAAGAGCCGGAACACGATGATCCTCAGAGCACCGAATCATCTGAGAATAATGCGTTGATCAATGAAGAAGAGTCGAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAGGTAGAAGGGAATAAGCTTTTTGTAGAAGGGAAGTATGAAGAGGCATTATTACAGTATGAACTTGCTTTACAAGTAGCATCTGACATGCCTTCATCTGTGGAAATACGGTCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGAAAAATATGACAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGACAAGGCTATTGATGatatgaaaaagatcttagaaattgatccctcaaatgatcaagctaggaaaaccattcggcggctagagacccttgctgcagaaaaaagggaaaagatgattgCACAAGTGAAAGACATGGGCAATTCTTTCCTGCGCTACCTTGGGCTGAAGGAAAACAACTTTAAAGCAGTCAAAGATCCAAACACTGCAAGAAAGAGGCAGTCTAAAGTGATACAGGTAATGTTGGAACTCTGA 849 0.3698 MVVIEQEESEHRNANPSNDASDGFETASDTDLASDGDDGGAGSPEEQNHIEQSHTEQNHTEQSHTEKHQQQQQTEQEPEHDDPQSTESSENNALINEEESRQKALDQANEAKVEGNKLFVEGKYEEALLQYELALQVASDMPSSVEIRSICHSNRGVCFLKLEKYDNTIKECTKALELNPVYVKALVRRGEAHEKLEHFDKAIDDMKKILEIDPSNDQARKTIRRLETLAAEKREKMIAQVKDMGNSFLRYLGLKENNFKAVKDPNTARKRQSKVIQVMLEL 282
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03277 282 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Gma08g03277 282 SMART tpr_5 183 216 IPR019734 GO:0005515
Gma08g03277 282 SMART tpr_5 149 182 IPR019734 GO:0005515
Gma08g03277 282 SMART tpr_5 108 141 IPR019734 GO:0005515
Gma08g03277 282 Pfam Tetratricopeptide repeat 184 216 IPR013105 -
Gma08g03277 282 MobiDBLite consensus disorder prediction 1 15 - -
Gma08g03277 282 Pfam Tetratricopeptide repeat 151 180 IPR001440 GO:0005515
Gma08g03277 282 MobiDBLite consensus disorder prediction 49 86 - -
Gma08g03277 282 ProSiteProfiles TPR repeat profile. 149 182 IPR019734 GO:0005515
Gma08g03277 282 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 51 273 - -
Gma08g03277 282 Coils Coil 216 236 - -
Gma08g03277 282 SUPERFAMILY TPR-like 104 228 IPR011990 GO:0005515
Gma08g03277 282 Coils Coil 94 114 - -
Gma08g03277 282 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 51 273 - -
Gma08g03277 282 MobiDBLite consensus disorder prediction 1 93 - -
Gma08g03277 282 Gene3D Tetratricopeptide repeat domain 96 243 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma08g03277 Gma-Chr8 49513543 49518449 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03277 73 250 Calmodulin-binding Proteins AT3G25230 33.854 2.03e-16 77.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03277 K24926 - gmx:100792585 497.664