Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03233 ATGGAAGGTCGCCGGAGGGTAACTCTACATGAACAAATGTCAGCTTCCGATAACAGCCGAGCCCGAGAGCTAGCCGGCTTGACCCTTGACGACGTGTTAGGGAACCAGAAGAGACCTTCTTCAACACCTCCCAGCCAACAACTTCCCAAGAGCCGAACCCTACTTGACATCATCAAAGAAGACGAGAGCAACAAGAAAGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTGAAGCGCGCAGGCTCAGCTTGGACATCGACAATTCATATCCCGACTTCGGATGTTCCTATCCCTAACCCGAATAGCAGAATCTTCACCCAGTTTGGTCACCGCAACTCGGTCCAATCCCCGACTCAGACTCTGACTCTGACTCACTCCGACTCGGACATGTCAACTCCCTACGATGCTCGCCAAGTCGAAGACCTCGACCCCGCCGCCGCCGACGACTCCGGTTATCCGGCCACCATGCCTCCCGCCGTCCGCCCCCAGTTTAGCCGCCGCGGATCCACCCGCTTCGACGGCGACCCCTCCGGCGAAAACACCGCCGGCACGCTCCGGCCGCAGCTCTCGCGGCGGAACTCCACCAACATGCCGTCGGAGCCCTACAAGCGTGGCCGCGTGGTGACGTTCCGCGACACCTTCGACGACGAGGACGACGGCGGCGAGAAGCCGGGGGAGGGGAGGGCGCTGTCGGCGAGGGAGGCGGTggcggcgcaagaggcggcagaggcggcggcgcaggaggcggaagaggcggaagagcaggCGCCGGTGATGATGTCGCTGATGGACTTGCTGGAGGAGACGGACAGGGAGATGGGGCTCGAAGGATCGAGGTATATATtgagtgatgatgatgaggatgaagatgaagatgatgatgGTGGAGAGGGTTCTATGGAACACACTTGCTGTGTTTGCATGGTGAGGCATAAGGCTGCTGCTTTTATACCTTGTGGCCACACCTTCTGCAGGATGTGCTCAAGGGAGCTTATGGTTAGTAGGGGGAATTGCCCTCGCTGCAACAATTTCATTTTGGAGATTCTTGACATTTTCTGA 1068 0.5272 MEGRRRVTLHEQMSASDNSRARELAGLTLDDVLGNQKRPSSTPPSQQLPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSTIHIPTSDVPIPNPNSRIFTQFGHRNSVQSPTQTLTLTHSDSDMSTPYDARQVEDLDPAAADDSGYPATMPPAVRPQFSRRGSTRFDGDPSGENTAGTLRPQLSRRNSTNMPSEPYKRGRVVTFRDTFDDEDDGGEKPGEGRALSAREAVAAQEAAEAAAQEAEEAEEQAPVMMSLMDLLEETDREMGLEGSRYILSDDDEDEDEDDDGGEGSMEHTCCVCMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPRCNNFILEILDIF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03233 355 Coils Coil 235 258 - -
Gma08g03233 355 MobiDBLite consensus disorder prediction 1 20 - -
Gma08g03233 355 PANTHER OS01G0917900 PROTEIN 2 355 - -
Gma08g03233 355 SUPERFAMILY RING/U-box 306 351 - -
Gma08g03233 355 MobiDBLite consensus disorder prediction 34 52 - -
Gma08g03233 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 355 IPR013083 -
Gma08g03233 355 MobiDBLite consensus disorder prediction 208 232 - -
Gma08g03233 355 CDD RING-HC 307 344 - -
Gma08g03233 355 ProSiteProfiles Zinc finger RING-type profile. 307 345 IPR001841 -
Gma08g03233 355 PANTHER OS01G0917900 PROTEIN 2 355 - -
Gma08g03233 355 MobiDBLite consensus disorder prediction 32 52 - -
Gma08g03233 355 MobiDBLite consensus disorder prediction 177 203 - -
Gma08g03233 355 MobiDBLite consensus disorder prediction 148 235 - -
Gma08g03233 355 Pfam Zinc finger, C3HC4 type (RING finger) 304 348 - -
Gma08g03233 355 SMART ring_2 307 344 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03233 Gma-Chr8 49058624 49060852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03233 18 355 C3H Transcription Factor Family AT3G07120 36.061 6.65e-54 179