Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03206 ATGACAACTTCAGAGCAGCAAGTCCCTCCCAAAACTCCTGCAGCTGATATTGTTGGCAATGCTTTTGTTGATCAATACTACCATATGTTGCATGAAAGCCCTGAGCTGGTGCATAGGTTTTACCAAGATGTCAGCAAACTTGGCCGTCCTGAGCAGAATGGCATAATGGGTATTACAACCACAATGCTTGATATTAACAAGAAAATACTATCATTGGGTTATGGGGAACTCAGTGCAGAGATCGTATCAGTGGATGCACAAGAATCTTATGACGGGGGAGTCATTGTCTTGGTCACTGGGTTTATGATAGGAAAGGATGACattaagcagaaatttactcaatgttttttccttgctcctcaagagaaaggctactttgttttGAATGATGTTTTTAGATATGTTGATGAAAATGGAATCCAAGGGTCTGCTCATGATATTGGATCTCCTGCCCCTCCGGACACTGTTTCCAATCCTTCTGTGCTGGAGACACAAGTTTCCGAGCAAATATCTGTGACAGCTGAGGATGGTGATGAAGAGGTAGTCTACAATCCAGAAAATGGTCAAGCTGCAATTGAAGAAGAGGAAGCACCTGTACCTGAGGTTCTTGATGAAATTCCTGATGATTCTCAGATGGTAGCTGGATTGGCATCTCAAATTGAAGAAGTTCCAAAGAAGTCTTATGCTTATATTGTGAAGGTCATGAAAGAGGGTGCCATGCCGTCTTCCACTGTGACACCTGTTCCAGTGAAATCTGCCCACAAGAGTCAAGAACAGCAGGGTATTGCTGCACCTCCACCATCTAGCATATCAGAGACAAATGGTTCTGTTATAAATACTAATGAAGTTGGAAACATTCAAGAAGCTGAAGCCGAGGGCTATTCTATTTATGTGAAAGGTCTGCCACCAACTGCTACGCCTGCAGTCTTGGAGAATGAGTTTAAGAAGTTTGGACCTATTAAGAGTGGTGGCATCCAAGTTAGGAGCCAAAAGGGATTTTCCTATGGCTTTGTGGAGTTTGAAGTGGCAAGTGCTGCGCAAAGTGCACTTGAGGCTTCTCCAATTTCGATCAATGGCCGTCTCGTCGTTGTAGAAGAGAAGAGATCAACTAATCGAGGTAGAGGACGTTTCTCATCTGGCAGGGCTCCTAGCTTCAGGGGTGAAGGTGCAAGAGGGCGTGGAAATTATGGAAATGGCCGAACCTATGGCCGTGGTGGTGACTTTAATGGCAGGGGAGAATATGGTTATAGGAATGGCAATCGGGGAGGGTTTTCAAGCCGTGGAGGTGATGGGTATCAGAGAAATGATCATATGGGTACCGGCGGTGGCCGCATGAATCGAGCAGGTGGGTCGGCTGTTAATCCAGCAGTCAAGACTGCCGGTGTTTGA 1389 0.4377 MTTSEQQVPPKTPAADIVGNAFVDQYYHMLHESPELVHRFYQDVSKLGRPEQNGIMGITTTMLDINKKILSLGYGELSAEIVSVDAQESYDGGVIVLVTGFMIGKDDIKQKFTQCFFLAPQEKGYFVLNDVFRYVDENGIQGSAHDIGSPAPPDTVSNPSVLETQVSEQISVTAEDGDEEVVYNPENGQAAIEEEEAPVPEVLDEIPDDSQMVAGLASQIEEVPKKSYAYIVKVMKEGAMPSSTVTPVPVKSAHKSQEQQGIAAPPPSSISETNGSVINTNEVGNIQEAEAEGYSIYVKGLPPTATPAVLENEFKKFGPIKSGGIQVRSQKGFSYGFVEFEVASAAQSALEASPISINGRLVVVEEKRSTNRGRGRFSSGRAPSFRGEGARGRGNYGNGRTYGRGGDFNGRGEYGYRNGNRGGFSSRGGDGYQRNDHMGTGGGRMNRAGGSAVNPAVKTAGV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03206 462 SMART rrm1_1 295 365 IPR000504 GO:0003723
Gma08g03206 462 MobiDBLite consensus disorder prediction 372 404 - -
Gma08g03206 462 MobiDBLite consensus disorder prediction 254 273 - -
Gma08g03206 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 369 IPR000504 GO:0003723
Gma08g03206 462 SUPERFAMILY RNA-binding domain, RBD 286 399 IPR035979 GO:0003676
Gma08g03206 462 Gene3D - 7 138 - -
Gma08g03206 462 Pfam Nuclear transport factor 2 (NTF2) domain 18 134 IPR002075 -
Gma08g03206 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 354 IPR000504 GO:0003723
Gma08g03206 462 PANTHER NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN-RELATED 9 404 - -
Gma08g03206 462 ProSiteProfiles Nuclear transport factor 2 domain profile. 18 134 IPR018222 -
Gma08g03206 462 CDD RRM_SF 296 365 - -
Gma08g03206 462 CDD NTF2 15 136 IPR018222 -
Gma08g03206 462 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 404 IPR039539 -
Gma08g03206 462 Gene3D - 247 383 IPR012677 -
Gma08g03206 462 MobiDBLite consensus disorder prediction 419 462 - -
Gma08g03206 462 SUPERFAMILY NTF2-like 15 135 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03206 Gma-Chr8 48809177 48814012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03206 295 366 Eukaryotic Initiation Factors Gene Family AT2G36660 38.356 1.25e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03206 K24983 - gmx:100816544 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01461 18 37947605 37951438 Gma08g03206 08 48809177 48814012 GST