Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03199 ATGGAAGAAGACTTCGACATCCCCGGCGGCGAGGAAATGGATCTCGGCGAAGACAAGGTCGGCGAGGAGCGGGAGATCGGCTCCCGCGGCCTCAAGAAGAAGCTCCTCAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGTTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACTATTCCTCCTAATGCTACACTCCAATTTGATGTTGAGCTGCTGTCATGGACTAGTGTAAAGGACATATGCAAGGATGGCGGTATATTTAAGAAGATAGTTACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGGGGTGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAAGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCTGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATCCTGAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCACTGTTGACCATTGCACCTGAATATGCTTTTGGTTCATCAGAGTCCCAGCAGGAGTTGGCTGTAGTTCCTCCTAACTCAACTGTTTATTTTGAAGTTGAGCTAGTTTCATTTGAGAAAGAGAAGGAGTCCTGGGATTTGAACACTGAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCAGTTAACTGACTTGGATTTGGCTGAACTTGACATTAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTCAAATTGGAATTGGTTCCTGATAGCAATAAACCAGCTACCAAGTACCAACGGTATTGA 1587 0.4367 MEEDFDIPGGEEMDLGEDKVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYEVHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKLQDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQQELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASKRYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLESTNVKALYRRAQAYMQLTDLDLAELDIKKALEIDPNNRDVKLELVPDSNKPATKYQRY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03199 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 275 371 IPR001179 GO:0003755
Gma08g03199 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 250 IPR001179 GO:0003755
Gma08g03199 528 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 43 133 IPR001179 GO:0003755
Gma08g03199 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Gma08g03199 528 Gene3D - 140 253 IPR046357 GO:0003755
Gma08g03199 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 253 IPR001179 GO:0003755
Gma08g03199 528 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 374 IPR001179 GO:0003755
Gma08g03199 528 Gene3D - 24 139 IPR046357 GO:0003755
Gma08g03199 528 PANTHER PEPTIDYLPROLYL ISOMERASE 373 514 - -
Gma08g03199 528 Gene3D - 254 375 IPR046357 GO:0003755
Gma08g03199 528 PANTHER PEPTIDYLPROLYL ISOMERASE 262 373 - -
Gma08g03199 528 PANTHER PEPTIDYLPROLYL ISOMERASE 1 260 - -
Gma08g03199 528 SUPERFAMILY FKBP-like 258 391 - -
Gma08g03199 528 Pfam Tetratricopeptide repeat 474 507 IPR001440 GO:0005515
Gma08g03199 528 SUPERFAMILY FKBP-like 22 149 - -
Gma08g03199 528 Gene3D Tetratricopeptide repeat domain 377 527 IPR011990 GO:0005515
Gma08g03199 528 SUPERFAMILY FKBP-like 140 256 - -
Gma08g03199 528 SUPERFAMILY TPR-like 380 514 IPR011990 GO:0005515
Gma08g03199 528 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Gma08g03199 528 MobiDBLite consensus disorder prediction 1 32 - -
Gma08g03199 528 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 262 373 - -
Gma08g03199 528 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 260 - -
Gma08g03199 528 SMART tpr_5 440 473 IPR019734 GO:0005515
Gma08g03199 528 SMART tpr_5 474 507 IPR019734 GO:0005515
Gma08g03199 528 SMART tpr_5 391 424 IPR019734 GO:0005515
Gma08g03199 528 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 373 514 - -
Gma08g03199 528 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03199 Gma-Chr8 48736193 48740642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03199 19 513 Calmodulin-binding Proteins AT3G25230 83.030 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03199 K09571 - gmx:100812632 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01451 18 37112555 37117304 Gma08g03199 08 48736193 48740642 GST
Gma08g03199 08 48736193 48740642 Gma03g00788 03 28687821 28691623 PCT
Gma08g03199 08 48736193 48740642 Gma16g00786 16 11286697 11290890 PCT
Gma03g00788 03 28687821 28691623 Gma08g03199 08 48736193 48740642 PCT
Gma16g00786 16 11286697 11290890 Gma08g03199 08 48736193 48740642 PCT