Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03195 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCTCCACACCACCATCATCACCATCTTTGTCCACCACCCTCTTGGCAATCATCACTGTCTTCTGCCATGGATGTTCAAGTCACTGTTTTGAATTGTTCAACTGAGCAGAACCCGGATTGCTTCTACAACAACACCCCCACATGGGACAAGTCAACGGATCATCATGGTCTTCAGTTTGATTCAGCTCTGAGCTCAATGGTGTCCTCTCCTGCAGCCTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAATTGATTGGAAAATTGGGAAACATTGGTGCTGGCTCTGATGAGATTGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTGCATCTTCCTACATCAATTGCAATAACAACAGCACCAACACATCATGTTATAGTACCCCTTTGAGTTCTTCTCCAAAGGTGAACATGAACAAGATCCCCACAATGGTGAAGCACTTGGTGAAAGAGGGCATGCCCCTAAGTTTGGGGACATCAACGTCCTTGAATTCCACCGTGGCGGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGCTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGTGCCTCAACATTGCTGAATTGGCTCAGAGATCTTCTCCATTGGTGGAAAATGGGAAGAAGCAGCTCCCTAGAGTCTCAAGTAGTCCATCACTCAAAGTGCTTGGATCTCAAATGGGTACTCAGGAGAACAAGAATTCTCCATTGCAAGACCTAATGGAAGTGGCCAATTCTCAAGAGGAGTCCGCAATCTCTGAACAAACACCAAATGGAGACACTGGGGAGAAACCTTCCCCTTATGTGAATTCTAGGAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAAGAAACTTCAACCTCTACCAACCCCCCTATGGCTGCTGAAGCTAGCGATGACTCGAATGCAAAGCGCAGCAAGCCTAACGAAGGTGAGGGGAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGAGGTAATAATAGTAATGCAAATGATGAGAAACAGAACAAGAGTAACTCAAAacctcctgagcctccaaaggattacattcatgttagagcaagaagaggtcaagccactgatagtcatagtcttgcagaaagagttcggagggagaaaatcagtgaaagaatgaagcttctccaagatcttgtcccaggttgcaacaagGTCACGGGTAAAGCACTAATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACAGCCAATATTCCCAATAGATTCCTCGGCGCCACCCTTTTATGGGCAACAAACTCAGCCAAACCCAGCAATCCACAATAACATTCCTAATGGAACTATGACCCACAACTCAGTGGACCCATTAGATACTGGTATGTGCCAAAACCTTGGCATGCATTTACCACACCTAAATGGTTTTAATGAAGGTGGCTTTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAATGGCTCAAATCAAGAACCCCTATGA 1761 0.4055 MENQFFLNAGVPPQLHFEPSPHHHHHHLCPPPSWQSSLSSAMDVQVTVLNCSTEQNPDCFYNNTPTWDKSTDHHGLQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGAGSDEIEISPHSQPLVGASSYINCNNNSTNTSCYSTPLSSSPKVNMNKIPTMVKHLVKEGMPLSLGTSTSLNSTVAEFSADPGFAERAAKLSCFGSRSFNGRTTQLCLNIAELAQRSSPLVENGKKQLPRVSSSPSLKVLGSQMGTQENKNSPLQDLMEVANSQEESAISEQTPNGDTGEKPSPYVNSRKRKGPSKGKAKETSTSTNPPMAAEASDDSNAKRSKPNEGEGNENGQVKAEEESKGGNNSNANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAQPIFPIDSSAPPFYGQQTQPNPAIHNNIPNGTMTHNSVDPLDTGMCQNLGMHLPHLNGFNEGGFQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQEPL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03195 586 Coils Coil 439 459 - -
Gma08g03195 586 CDD bHLH_AtBPE_like 382 467 - -
Gma08g03195 586 MobiDBLite consensus disorder prediction 331 353 - -
Gma08g03195 586 PANTHER BHLH TRANSCRIPTION FACTOR 2 583 - -
Gma08g03195 586 MobiDBLite consensus disorder prediction 566 586 - -
Gma08g03195 586 MobiDBLite consensus disorder prediction 234 383 - -
Gma08g03195 586 MobiDBLite consensus disorder prediction 241 296 - -
Gma08g03195 586 MobiDBLite consensus disorder prediction 354 370 - -
Gma08g03195 586 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 390 461 IPR036638 GO:0046983
Gma08g03195 586 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 392 442 IPR011598 GO:0046983
Gma08g03195 586 SMART finulus 398 448 IPR011598 GO:0046983
Gma08g03195 586 Pfam Helix-loop-helix DNA-binding domain 396 443 IPR011598 GO:0046983
Gma08g03195 586 MobiDBLite consensus disorder prediction 313 327 - -
Gma08g03195 586 Gene3D - 389 464 IPR036638 GO:0046983
Gma08g03195 586 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 583 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03195 Gma-Chr8 48702810 48705892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03195 1 552 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 40.853 5.31e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma08g03195 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03195 - - gmx:100812081 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01434 18 36745692 36748158 Gma08g03195 08 48702810 48705892 GST
Gma08g03195 08 48702810 48705892 Gma03g00793 03 28874000 28877738 PCT
Gma08g03195 08 48702810 48705892 Gma16g00776 16 11112404 11115976 PCT
Gma03g00793 03 28874000 28877738 Gma08g03195 08 48702810 48705892 PCT
Gma16g00776 16 11112404 11115976 Gma08g03195 08 48702810 48705892 PCT