Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03176 ATGGTGAAGAAAGGTCCATGTTCGCATTGTGGAGTTACTCATACTCCACTTTGGCATGATGGACCAACTGAGAAACCAGTGTTGTGTAGCGATTGTGGATCACAATACAAGTTAAAAGGAAATTTAGACAATTATTTTCCCAAGAATCCCGTTGTTCAGTCATTCCACAATAAGTTTACAAATGTAAATGGTGGAAAACATCTCAATGTTGATGTGGACCAACTTTCAAACTATGTTCCACCAACTGATGAAGACAACAATATGTCAACCCCAAATGTCCATTGCATATCCGCGCAAGATTTTGGGAGCAAAATCCCTTCAAGGAAACGGTCACGGGTGGTATACCTGACACCATTGAAGGAGTGTATGGAGGAGCTTTGGAAATTACATAGAAATTATGGAAGGCATGCAGAAGAGCGTATATTGGAGGATAATGTGAACAACTTCATACCCGAAAATGAGATAGCAGGACTTGGAGCCATTCTTCTTAAGACGGATCATGATGTTGCAGCTTCTGCAGATACATGTGAATCATCCACAGATGATTGA 549 0.4062 MVKKGPCSHCGVTHTPLWHDGPTEKPVLCSDCGSQYKLKGNLDNYFPKNPVVQSFHNKFTNVNGGKHLNVDVDQLSNYVPPTDEDNNMSTPNVHCISAQDFGSKIPSRKRSRVVYLTPLKECMEELWKLHRNYGRHAEERILEDNVNNFIPENEIAGLGAILLKTDHDVAASADTCESSTDD 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03176 182 ProSiteProfiles GATA-type zinc finger domain profile. 7 55 IPR000679 GO:0006355|GO:0043565
Gma08g03176 182 PANTHER OSJNBB0038F03.10 PROTEIN 1 70 IPR044589 -
Gma08g03176 182 PANTHER OSJNBB0038F03.10 PROTEIN 98 179 IPR044589 -
Gma08g03176 182 PANTHER OSJNBB0038F03.10 PROTEIN 1 70 - -
Gma08g03176 182 PANTHER OSJNBB0038F03.10 PROTEIN 98 179 - -
Gma08g03176 182 CDD ZnF_GATA 6 40 IPR000679 GO:0006355|GO:0043565
Gma08g03176 182 SMART GATA_3 1 63 IPR000679 GO:0006355|GO:0043565
Gma08g03176 182 Gene3D - 2 59 IPR013088 GO:0006355|GO:0008270
Gma08g03176 182 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gma08g03176 182 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03176 Gma-Chr8 48544592 48547946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03176 1 47 C2C2-Gata Transcription Factor Family AT4G17570 65.957 2.30e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma08g03176 GATA 3e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03176 - - gmx:100812623 234.572