Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03169 ATGGAAGTGTCATTCAACCATTTTTATAGGGAATGCAATGTTTTGGCACCTTTTGCTAAGAATGGTCTCTCTATAGATCATGGTGTTATCTTTTTTATGTATACTCCTAACTTTGCTACTGAGGCATTAAGGTCTGATATTATTGCCTTAAGTTCTGAGTATTCTGATCGCTCCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAGGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTTGGTAATTGTGAAGAAAGGTGAGAATGATTTACCAGGATTGACTGATGTTGAGAAGCCAAGGATGAGAGGCCCAAAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGGGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCACTCCTCTTACGCTCCAAAGAAAGCGGGCAAGAATTGCTGATAAGAAGAAGAGGATTGCCAAGGCAAAATCTGAGGCAGCAGAGTACCAGAAACTCCTTGCCTCCAGGTTGAAGGAGCAGAGAGACCGCCGCAGTGAGAGTTTGGCCAAGAGGAGATCCAAGCTTTCCAGTGCTGCTAAGGCAGCAGCTGTATAA 963 0.4621 MEVSFNHFYRECNVLAPFAKNGLSIDHGVIFFMYTPNFATEALRSDIIALSSEYSDRSLRELVAAVAEEDCKMKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVIGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSAAKAAAV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03169 320 MobiDBLite consensus disorder prediction 290 309 - -
Gma08g03169 320 ProSitePatterns Ribosomal protein S6e signature. 124 135 IPR018282 GO:0003735|GO:0005840|GO:0006412
Gma08g03169 320 MobiDBLite consensus disorder prediction 290 320 - -
Gma08g03169 320 PANTHER 40S RIBOSOMAL PROTEIN S6 73 318 - -
Gma08g03169 320 Coils Coil 261 288 - -
Gma08g03169 320 PANTHER 40S RIBOSOMAL PROTEIN S6 73 318 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma08g03169 320 SMART Ribosomal_S6e_2 73 200 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma08g03169 320 Pfam Ribosomal protein S6e 73 200 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma08g03169 320 Hamap 30S ribosomal protein S6e [rps6e]. 3 189 IPR020924 GO:0003735|GO:0005840|GO:0006412
Gma08g03169 320 Gene3D - 205 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03169 Gma-Chr8 48479352 48483285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03169 73 314 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.140 7.43e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03169 K02991 - gmx:100804076 413.305