Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03146 ATGTATGTTGCTGACAGGACGCGTAGCAAGCGGGGAGGGGTGGTTGGAAGTGGTTTAATAATGGGTGAGAAGAAGAAAAGGGTGCATGACTACCATGAAGAGATTGTCTTGGAAGATAATGAAGAAGGTGCAAGTGTGAAAGTTGAACCTGGGCCTGGTGCTTCTTCATCGTCATCATCATCTGGTGCTCGTGCTTTGAAGCGGGAAAGGGTATCTGAACATGGTTTTCAGAATTTGGGAGGGCGTGCAGATGACCCTATTAAAATCAGTGACAGTGAAGATGATGATGGTGAAGAGGGGTTGAGTGATTTTGAGAAGAAGAGGTTTCTGGGTGAAGAGGAAAAGGAAAGGAAGAGCGAGGAGGGTAAAGGTTGTGGCGGTGAGAAGAAGCATGCTGTGGCTGAGAGTGGTTCAAATGATGAGGGATATGATTCTCTTTTGTCTAGTTTATCGGAGAGTGAGAATGCTGTGACCAGTGATGAAGATTTTCAGGTTGATGATGATGGGAATGAGAGTCATTACTACTCGAGCAGTGATTCTTCTTCATATGATGATGGTGAGAGGGGTGGATGCAGAAAGATGGTGAAAGAGAGGGTGAGAAAGGTGGAGAGTGAAACTGAAAGtagtgtagtttacaaaagaaaaggtgaaaggaaagatattgagcttgtagaggaggaagagccacggattggtgctgattgttctagtgcaacctctaataaatctgagatttataaggaggaaccagggcatggagcacagaagcataaagtaaagagggtggagagtgtcaatgccgatgcctttggtgatcactcggagagttcagatcactctatgcagtctgaagctgaagcattggaacatatgaaaaaaagagatagagaccatcaaaatgtgtcattggagaataaggcaggagattcagctgtggtcaagatgagtgagaaaaatgataatgttgatgccggcaaggtaggagaacataaatatgagtttaacagcaataaacgtgagaagccagagaaggtaagggtggtggatgacgaaactgacgacaaacatgagctgtatgaagtcctaaggatgccatctagaacaaaaaaccgatgcctcaagttttttactGAATGCTTTTGGGGCGAGAATGATTCTGTTAAAGATGATTCAAATCAGTTGGAAGAAAAGGATGATGATATTGATCAGGGTCAGACTCAGCCACTAGCTTCTAGGGAGACAGTCCTTGTGAATTGGAACTTTACGAAGAAAGAACTCATTGAAAAATCAGAGTTTGAGAAGGAGTTAGATAACTTGTGGGGTGAAATGGATATGCTCCTTCGAGTTGAAGAAATTGGGTCTCAGATTGATAAAGTAGGGGAAAATGAAGAAAATTCAGCCTCACAGTGCAAGCACGACACTATTTTCAATGAGGAGATTGGGATATACTGCAGATGGTGTGGTTGGATTCACACTGAAATCAAATATATCACGCCACCATTTGTGGATAATGAAAGATCTGGTCGAGAGGCGTTATCTGGTGGAGGGAAAACTTCACAATTTGATGGGGTTCTGTTTAATGATTCTGTTGATGACTCGGAGGCAGTTTGGTCTCACAATGAAGGCACGGTTTGGGATCTTATTCCTGACATAAAAGAAAGCTTGTTTCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAGTTTGGCAGGAACCATTGACCTTGCTGAGTTGAAGAGGGTTGACATGCATACTGAGGGAGGGTGCATTATTTCACATGCTCCTGGAACAGGAAAGACAAAGTTGACCATGGTGTTTCTTCAGACATATTTGCAACTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTAAGGAAGTGGAACCTAGGAATTCCCTTTCATAACTTGAACAATGCTGAATTATCCGGAAACGAGCAAGACATTAATGAAGTTGACTTGTCTGGCAATCAAAGGCAGAATAAGGATGCCATCCGAATGGTGAAGTTGTGTTCGTGGTACAAGGAAAAGAGCATTCTATTAATCAGCTACCATTTGTATGAGAGGCTAGCCAGGGGGTTGTGCGAAGATGATGGGAAAAAAGAGAAGAAAAATAAAAAGATGAAAAAAGGGAAGAAACGTGCAAGGACTAGGGAGTACATTGAAACTGCAATGGGAAAGGTTTTGCGTGACTATCCTGGTTTGCTAATTCTTGATGAAGGGCACACACCACGGAATCAGCGtagctatatttggaaggttctctcagaaagtagatctcaaaagcgagtccttctttcagggactcctttccagaacaattttCTGGAACTCTACAATATTTTGTGCTTAATGAAGCCATCCTTTCCTGACAGCATACCGCAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAAGGAAGGAAAGGAAAGCTTCAAAATATGCGAGTTATGAACCCATTTATTCTGGAAATTCAGCTGATGAGAAAATAAAGCAGCTGAAATCGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCCGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACAGGCTGCAGCAAGAAACTTTGGACATCATTGATTCTTCTCAAAACATACTGAACTTTGAACATAAGTTGGCGTTGGTATCAGTCCATCCATCTCTTTTTCTAAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTCTTGACAAGGATCAGTTGGAAAAGCTTAGATTGAACCCTTATGTAGGGGTTAAAACCAATTTTTTGTTGGAGCTTGTGAGACTATGTGATGCAGTTAACGAAAAAGTCCTTGTTTTCAGCCAATTTATTGATACCTTATGCTTAATCAAGGACCAACTCGAGTCAGCCTTTCATTGGTCTGTGGGGACTGAAGTGTTGTATATGTATGGCAAGCTAGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATACAAATAGCAAAGCAAAGGTGTTGCTTGCATCTATAAAAGCATCTTCTGAAGGAATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCGGTGGAAAGACAAGCTATTTGTCGAGCATATAGACTCGGACAAAAAAAAGTTGTTTACACTTATCATCTTCTTGCACAGGACACCCCTGAATGCATCAAATTTTGTAAACAAGCAGAAAAGGACCGGTTATCTGAACTGGTTTTCTCCAATAAAAATGCTAAAAGTGATAAGCTTAACAGTTGTGGAGCAGCGCTTGAGGATGCAGTTCTTGATATCATGGTTCAGCACGAAAAACTTAAGGATATGTTTGGTGAACTTCTGGTTCAACCAAAGGAGAGAGATTTTGGAGACTTTGGGCCCCTGATGCTTTGA 3447 0.3446 MYVADRTRSKRGGVVGSGLIMGEKKKRVHDYHEEIVLEDNEEGASVKVEPGPGASSSSSSSGARALKRERVSEHGFQNLGGRADDPIKISDSEDDDGEEGLSDFEKKRFLGEEEKERKSEEGKGCGGEKKHAVAESGSNDEGYDSLLSSLSESENAVTSDEDFQVDDDGNESHYYSSSDSSSYDDGERGGCRKMVKERVRKVESETESSVVYKRKGERKDIELVEEEEPRIGADCSSATSNKSEIYKEEPGHGAQKHKVKRVESVNADAFGDHSESSDHSMQSEAEALEHMKKRDRDHQNVSLENKAGDSAVVKMSEKNDNVDAGKVGEHKYEFNSNKREKPEKVRVVDDETDDKHELYEVLRMPSRTKNRCLKFFTECFWGENDSVKDDSNQLEEKDDDIDQGQTQPLASRETVLVNWNFTKKELIEKSEFEKELDNLWGEMDMLLRVEEIGSQIDKVGENEENSASQCKHDTIFNEEIGIYCRWCGWIHTEIKYITPPFVDNERSGREALSGGGKTSQFDGVLFNDSVDDSEAVWSHNEGTVWDLIPDIKESLFPHQQEGFEFIWTSLAGTIDLAELKRVDMHTEGGCIISHAPGTGKTKLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELRKWNLGIPFHNLNNAELSGNEQDINEVDLSGNQRQNKDAIRMVKLCSWYKEKSILLISYHLYERLARGLCEDDGKKEKKNKKMKKGKKRARTREYIETAMGKVLRDYPGLLILDEGHTPRNQRSYIWKVLSESRSQKRVLLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLRKERKASKYASYEPIYSGNSADEKIKQLKSLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDRLQQETLDIIDSSQNILNFEHKLALVSVHPSLFLNCSLSKKEESVLDKDQLEKLRLNPYVGVKTNFLLELVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFHWSVGTEVLYMYGKLDQKQKQSLIHSFNDTNSKAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQDTPECIKFCKQAEKDRLSELVFSNKNAKSDKLNSCGAALEDAVLDIMVQHEKLKDMFGELLVQPKERDFGDFGPLML 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03146 1148 MobiDBLite consensus disorder prediction 185 211 - -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 101 137 - -
Gma08g03146 1148 Pfam Helicase conserved C-terminal domain 943 1058 IPR001650 -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 31 211 - -
Gma08g03146 1148 Gene3D - 533 852 IPR038718 -
Gma08g03146 1148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 581 799 IPR014001 -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 141 158 - -
Gma08g03146 1148 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1140 - -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 223 242 - -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 387 409 - -
Gma08g03146 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1102 IPR027417 -
Gma08g03146 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 823 IPR027417 -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 31 45 - -
Gma08g03146 1148 Gene3D - 861 1132 IPR027417 -
Gma08g03146 1148 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1140 IPR044567 GO:0080188
Gma08g03146 1148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1099 IPR001650 -
Gma08g03146 1148 SMART ultradead3 551 807 IPR014001 -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 51 65 - -
Gma08g03146 1148 Pfam SNF2-related domain 573 883 IPR000330 GO:0005524|GO:0140658
Gma08g03146 1148 MobiDBLite consensus disorder prediction 269 303 - -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 387 403 - -
Gma08g03146 1148 MobiDBLite consensus disorder prediction 269 308 - -
Gma08g03146 1148 CDD SF2_C_SNF 937 1069 - -
Gma08g03146 1148 SMART helicmild6 973 1058 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03146 Gma-Chr8 48184955 48189059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03146 956 1103 RAD5 or RAD16-like Gene Family AT5G43530 38.514 1.57e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma08g03146 SNF2_N 9.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03146 K10875 - gmx:100806733 2206.02