Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03144 ATGACTTCAAAACTCAACCATAGAGATGATGGCTCTAATGGGGATAGTGCATCAAAGCCAATCCACTTTTTGAGGATCATGCACCCTGACAATCTTCTGCAAGGAAAGCTAAGGCTTCCAGCAGAGTTTGTAAACAAATATGGAAAACACTTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAGAGTAAATTTGGAGAAACGTGATGGTAGAGTTTGGTTTCAAGAAGGTTGGAAAAAGTTTGTGGAGCATCACTCCCTTGCACATGGGCACCTATTGGTTTTCAAATATGATGGAACATTCCATTTTCATGTACTCATCTTTGATCCTAGTGCCAATGAAATAGACTACCCTGTTAACAAAGCAAATCACAAAAGGGTCAGAATTAGTAGTGAAGAAATTCAACCTCCCACGACGTGCAAAACAAGTGGAAATAAGAGGAGTAATTCCAATTTGCAGGACAATGCCTTTCATCAGAAAGTCAGAGACCACAAAGGTAGGTACGAAAGTCCAAGTGAAGGGAAAAGAAACATGGAAGCTGCTGGGAGTATTTCCTTCACAGTGAGAATGAAATCAAGCTCTAAGCAGCACATGTATCTTCCAAAGGACTCACTGAAGGGATACATCAAAGGTGGTGAACAATATGTCAAGCTTCTGGTTGGGGAGAGATCATGGAGGGTTAAATTGGTCCATTACAAAAATCGATCTTCATGTTTCTTTAGTGCAAATTGGCCAGCTTTTGCAAGGGAAAACGATTTAAAAGAAGGAGATGCTTGCTGGTTCCAACTCCTAAACAGTAGTGATGACATAGTGATGAATGTTACCATTTCTAGAGAGGGACACTAA 858 0.4044 MTSKLNHRDDGSNGDSASKPIHFLRIMHPDNLLQGKLRLPAEFVNKYGKHLSNTMFLKLPNGAEWRVNLEKRDGRVWFQEGWKKFVEHHSLAHGHLLVFKYDGTFHFHVLIFDPSANEIDYPVNKANHKRVRISSEEIQPPTTCKTSGNKRSNSNLQDNAFHQKVRDHKGRYESPSEGKRNMEAAGSISFTVRMKSSSKQHMYLPKDSLKGYIKGGEQYVKLLVGERSWRVKLVHYKNRSSCFFSANWPAFARENDLKEGDACWFQLLNSSDDIVMNVTISREGH 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03144 285 SUPERFAMILY DNA-binding pseudobarrel domain 18 115 IPR015300 -
Gma08g03144 285 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 2 283 - -
Gma08g03144 285 SUPERFAMILY DNA-binding pseudobarrel domain 189 276 IPR015300 -
Gma08g03144 285 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Gma08g03144 285 PANTHER B3 DOMAIN-CONTAINING 2 283 - -
Gma08g03144 285 MobiDBLite consensus disorder prediction 136 160 - -
Gma08g03144 285 CDD B3_DNA 22 113 IPR003340 GO:0003677
Gma08g03144 285 MobiDBLite consensus disorder prediction 134 160 - -
Gma08g03144 285 ProSiteProfiles B3 DNA-binding domain profile. 187 284 IPR003340 GO:0003677
Gma08g03144 285 SMART B3_2 190 284 IPR003340 GO:0003677
Gma08g03144 285 SMART B3_2 23 115 IPR003340 GO:0003677
Gma08g03144 285 Pfam B3 DNA binding domain 193 282 IPR003340 GO:0003677
Gma08g03144 285 Pfam B3 DNA binding domain 26 113 IPR003340 GO:0003677
Gma08g03144 285 Gene3D - 174 284 IPR015300 -
Gma08g03144 285 Gene3D - 16 116 IPR015300 -
Gma08g03144 285 CDD B3_DNA 189 282 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03144 Gma-Chr8 48133939 48135408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03144 23 282 B3 DNA Binding Superfamily AT3G18990 28.443 1.38e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma08g03144 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03144 - - gmx:100793986 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01412 18 32749803 32752314 Gma08g03144 08 48133939 48135408 GST