Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03143 ATGACTTCACAGCTTGACGATGGAGATGGCTCCTACGGTTACAGTGCAACAAAGCCAATCCACTTTTTCAGGATCATGCTCCATGAGAACCTTCTGCAAGGAAATCTAAGGCTTCCGGAGAAGTTTGTGAGGAAATATGGAAATCACTTATCCAACTCAATGCTTCTTAAGCTTCCAAACGGTATAGAATGGAAGGTAAATTTGGAGAAACGTGATGGTAGTGTTTGGTTTCAAGAAGGTTGGAAAGACTTTGCAGAGTATTACTCTCTGGCCAATGGGCACCTATTGGGTTTTAGATACGATGGAACATCCCATTTTCATGTATTCATCTGTGATATGAGTACCATGGAAATAGAGTACCCTGTCAACAAAGCAAATCACAAAAGACCAAGCATTAATAGTGAAGAAAGTAAGGGAAACATGGAAGGGTCATCCATTAGTAACTGTGGAAATCATGAAGCAGCTGGAAATACTTCATTCACCGTGATAATGAAATCAAGCTACGTAAGTAAGCGGATCATGTATCTGCCAAAGAGCCCACTGAAGCGCTATACCAAATCTGGTGAACAATATGTCAAGCTTTTGGTTGGGGACAGATCATGGAGGGTTAAAGTGACCTATTGTCGAAATAAAACATTGAGTTACTTTACTGGAGATTGGCTAGTTTTTGCAAAGGAAAATGATTTAAAAGAAGGAGATGCTTGCTTGTTCCAACTTCTAAGCAATGGTGATGGCATCGTGATGAAGGTTTCTATTTCCAGACGGGTTTAA 771 0.4034 MTSQLDDGDGSYGYSATKPIHFFRIMLHENLLQGNLRLPEKFVRKYGNHLSNSMLLKLPNGIEWKVNLEKRDGSVWFQEGWKDFAEYYSLANGHLLGFRYDGTSHFHVFICDMSTMEIEYPVNKANHKRPSINSEESKGNMEGSSISNCGNHEAAGNTSFTVIMKSSYVSKRIMYLPKSPLKRYTKSGEQYVKLLVGDRSWRVKVTYCRNKTLSYFTGDWLVFAKENDLKEGDACLFQLLSNGDGIVMKVSISRRV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03143 256 CDD B3_DNA 21 112 IPR003340 GO:0003677
Gma08g03143 256 ProSiteProfiles B3 DNA-binding domain profile. 159 256 IPR003340 GO:0003677
Gma08g03143 256 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Gma08g03143 256 MobiDBLite consensus disorder prediction 127 148 - -
Gma08g03143 256 Pfam B3 DNA binding domain 160 255 IPR003340 GO:0003677
Gma08g03143 256 Pfam B3 DNA binding domain 23 112 IPR003340 GO:0003677
Gma08g03143 256 Gene3D - 144 256 IPR015300 -
Gma08g03143 256 SMART B3_2 22 114 IPR003340 GO:0003677
Gma08g03143 256 SMART B3_2 160 256 IPR003340 GO:0003677
Gma08g03143 256 Gene3D - 14 115 IPR015300 -
Gma08g03143 256 CDD B3_DNA 160 254 IPR003340 GO:0003677
Gma08g03143 256 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 2 147 - -
Gma08g03143 256 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 147 254 - -
Gma08g03143 256 SUPERFAMILY DNA-binding pseudobarrel domain 157 249 IPR015300 -
Gma08g03143 256 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Gma08g03143 256 PANTHER B3 DOMAIN-CONTAINING 2 147 - -
Gma08g03143 256 PANTHER B3 DOMAIN-CONTAINING 147 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03143 Gma-Chr8 48130664 48132491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03143 22 139 B3 DNA Binding Superfamily AT1G49475 34.746 6.97e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma08g03143 B3 1.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03143 - - gmx:102669906 497.664