Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03116 ATGCAGTCCAAGTCTGAAACTGCAAATCGGCTGAGGTCAGATCCTCATTCCTTTCAACCTGGCGGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCGTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAGGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGAAGCCTGCTGCTCCTAATGAAACAGGAAATTATGAGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTCCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTTCTACAAATCCTTACCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCTGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAAACTGACGGTGAGGGCTCAAACCACTTAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGCAGGTTCGAAGCACCCAGTTACCAAAATGGCAGTGGCTCCTACCATAACCATAATGGATTGCAATCTTCAGTGTACCATTCATCCTCAGGTGAAAGAGTGGAGGAAAGGGACTGTTCAGGTCAGCAGCTGAACCACAATTGA 1011 0.4649 MQSKSETANRLRSDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSKPAAPNETGNYEQEQQGMQHTASSPPSMREECLTQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQLNHN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03116 336 MobiDBLite consensus disorder prediction 319 336 - -
Gma08g03116 336 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Gma08g03116 336 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Gma08g03116 336 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Gma08g03116 336 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Gma08g03116 336 MobiDBLite consensus disorder prediction 250 318 - -
Gma08g03116 336 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Gma08g03116 336 MobiDBLite consensus disorder prediction 87 117 - -
Gma08g03116 336 MobiDBLite consensus disorder prediction 40 74 - -
Gma08g03116 336 Gene3D - 174 236 - -
Gma08g03116 336 MobiDBLite consensus disorder prediction 229 249 - -
Gma08g03116 336 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 333 IPR001289 GO:0003700|GO:0006355
Gma08g03116 336 MobiDBLite consensus disorder prediction 207 336 - -
Gma08g03116 336 MobiDBLite consensus disorder prediction 1 117 - -
Gma08g03116 336 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 333 - -
Gma08g03116 336 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Gma08g03116 336 MobiDBLite consensus disorder prediction 209 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03116 Gma-Chr8 47868013 47871555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03116 16 275 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.992 4.84e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma08g03116 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03116 K08064 - gmx:100783581 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00658 18 6684646 6688182 Gma08g03116 08 47868013 47871555 GST
Gma08g03116 08 47868013 47871555 Gma14g00095 14 794578 796711 PCT
Gma08g03116 08 47868013 47871555 Gma02g02842 02 53888936 53892862 PCT
Gma14g00095 14 794578 796711 Gma08g03116 08 47868013 47871555 PCT
Gma02g02842 02 53888936 53892862 Gma08g03116 08 47868013 47871555 PCT