Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03098 ATGTTTTGGGACATAACCCAAGAACAGCAAGAGGATCTCTGCACCCTAACCACTTTCGATTTTTTTCAAAACGCAACTGTCATCGTGTCGTTCACCGATAAGATGTCGTATTCAAGGAGATCAAGGTATTCTCGTTCTCCTTCTCCATACAAGCGATACAGTAGGTCTGTGTCCAGGTCTCTCTCAAGGACAAGCTCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAACATTTTTCTGCTGAGGGAAAAGTGATAGATGTCCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACTCTTGAGGAGGCAGATCGATGTGTAAAGTATCTGAATCGCTCAGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACACCAGGGAAGTATCTAGGGCTGAGAACTATTCGTGCTCAACGGCGTTCTCCAAGTGACTCTCCTCGTCGCTCCCCTAGCTATTCTCCTTATAGAAGAAGCTATAGCCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATAGGAGGAGGAAGTCAAACTATCCATATCACTCTAGGCGAAGGTCATACTCTCCATACTACAGCCGGTACAGGTCTTATTCTCGATATGATCGACACAGGTCATATTCTCGCTCTTGCTCTCCTTATAGCAGGTCACCTGTCAGCATCCGCGACAGATCATACTCTCCTTATGACtcacgatatgactcaccggatgatcactcctacagaaggcaccattacagatctgtttcacgaggtgcctcgcctgatgatcgctattatagaaggcaccattacaggtctgtttctcgaagtgcctcACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCTCGGAGTGCCACTCCTGTTTCAAAGAGGAGCAACTCGCGAAGTGTGTCCCCCAGGTCAAGGAAGAGTCATTCAAGAAGCTCCAAGAGGAGTGGCAAATATGAGAAACACTACTCAAGAAGCCCGAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCAAATACTCCAAGGTCTACCTCTCCTTCAACTTGA 1191 0.4223 MFWDITQEQQEDLCTLTTFDFFQNATVIVSFTDKMSYSRRSRYSRSPSPYKRYSRSVSRSLSRTSSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADRCVKYLNRSVLEGRVITVEKAKRRRGRTPTPGKYLGLRTIRAQRRSPSDSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYRRRKSNYPYHSRRRSYSPYYSRYRSYSRYDRHRSYSRSCSPYSRSPVSIRDRSYSPYDSRYDSPDDHSYRRHHYRSVSRGASPDDRYYRRHHYRSVSRSASPRPRRRSRRSYSRSATPVSKRSNSRSVSPRSRKSHSRSSKRSGKYEKHYSRSPSVSASSRSVSRSNTPRSTSPST 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03098 396 MobiDBLite consensus disorder prediction 370 396 - -
Gma08g03098 396 Gene3D - 30 166 IPR012677 -
Gma08g03098 396 MobiDBLite consensus disorder prediction 312 332 - -
Gma08g03098 396 CDD RRM_RBMX_like 81 160 - -
Gma08g03098 396 MobiDBLite consensus disorder prediction 258 272 - -
Gma08g03098 396 SMART rrm1_1 83 156 IPR000504 GO:0003723
Gma08g03098 396 MobiDBLite consensus disorder prediction 275 311 - -
Gma08g03098 396 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 41 315 - -
Gma08g03098 396 PANTHER TRANSFORMER-2-RELATED 41 315 - -
Gma08g03098 396 MobiDBLite consensus disorder prediction 41 68 - -
Gma08g03098 396 MobiDBLite consensus disorder prediction 41 85 - -
Gma08g03098 396 MobiDBLite consensus disorder prediction 250 396 - -
Gma08g03098 396 MobiDBLite consensus disorder prediction 158 233 - -
Gma08g03098 396 MobiDBLite consensus disorder prediction 347 363 - -
Gma08g03098 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 153 IPR000504 GO:0003723
Gma08g03098 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 160 IPR000504 GO:0003723
Gma08g03098 396 MobiDBLite consensus disorder prediction 186 213 - -
Gma08g03098 396 SUPERFAMILY RNA-binding domain, RBD 74 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03098 Gma-Chr8 47719464 47723836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03098 83 197 Eukaryotic Initiation Factors Gene Family AT2G36660 31.304 1.82e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03098 - - gmx:100805126 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00634 18 6304160 6311089 Gma08g03098 08 47719464 47723836 GST