Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03096 ATGCCAGTCATCGCCGCTAAGCGCACATTGAGATCCCACCCCTCATCGCCCCCTCGCAAATCGCCCCGCCGATGCACCGCCGCAACCCCCAATTCCACTCCAACGATGAACAGATTCGGCGCCGACGAAAACCGAGCTGACCCGGAAGCTGTGAAACCCAAGTGGAATCCCAAAGGTGAGATTCTAGTTTCTTTTATTTTCTTTCTTTCTTTTTCCCTTTTTAATTTTGGTTTCTGTAATTTTTGTGGTGGGGAAATAATAGACGGTGAGCAATTGAAGAGGGTGAAGCTGGCATTGCACTTGTCCACTGCGCCGTCTTCGGTCGTGTGCCGCGAGGAGGAGCAGAATGTGGTTTTGGAGTTCTGCAAGGGGTGCGTTGAGCACCAGAAGGCCGGGAGTCTCTACATATGCGGCTGTCCCGGAACTGGGAAATCGTTATCTATGGAGAAAGTGAAAGACAAATTACTCAATTGGGCCAAGGAGGCAGGTCTTCCACAGCCAGATGTTTTGTCTGTAAATTGTACAACCTTTACCAACACATCAGATATTTTCACTAAGATACTTGGGTTAAACCAAACACAGGGTAAAAAGGTTTCGGCTACGCCCTTACAGCAACTTCAGAACATGTATTCTCAGAAATCGTCTAACAAGAACATGACATTGATAGTAGCTGATGAGTTAGATTATTTGATAACCAAAGACAGAGGCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAACCTATTGTTGTAAATTTTCGGGCTTACTCTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAACTTCCTTACACTGTCTTCCAACAGCAAGCCATGGAATTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGTGACATGCGGAATGCTCTTTGTATATGCGGGAGGGCAATAGAGATGCTTGAAGCAGAAATTAGAGAGTCTGCCTGCAATTTGAATACTTCATTGGAAGAGATATCATCCTCCAGACAAAATCTTGCTACAGCTCCTGATTTTATGAAAAAACGAGAATTTGAGACTGTAAGGACTGATCATATGGCACGTGCCTTGTCCAAGACATATAGATCACCAGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTGTACTCTGCTCTTCTATGAAACATTTTCGTGGAGCCAAGAAAGATACAATCCTTGGAGAGTTGTATAAATCGTATGTGGGGGTATGCAAATCTTGTATAATTCCTCCAGCGGGAATCTTGGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCGCCTAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGGAGTACGTTTTTTTCATAACTGTCTTTAA 1506 0.4323 MPVIAAKRTLRSHPSSPPRKSPRRCTAATPNSTPTMNRFGADENRADPEAVKPKWNPKGEILVSFIFFLSFSLFNFGFCNFCGGEIIDGEQLKRVKLALHLSTAPSSVVCREEEQNVVLEFCKGCVEHQKAGSLYICGCPGTGKSLSMEKVKDKLLNWAKEAGLPQPDVLSVNCTTFTNTSDIFTKILGLNQTQGKKVSATPLQQLQNMYSQKSSNKNMTLIVADELDYLITKDRGVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQILKILEERLNELPYTVFQQQAMELCARKVAAASGDMRNALCICGRAIEMLEAEIRESACNLNTSLEEISSSRQNLATAPDFMKKREFETVRTDHMARALSKTYRSPVVDTIQSLPHHQQIVLCSSMKHFRGAKKDTILGELYKSYVGVCKSCIIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKVDEGDITFALQGVRFFHNCL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03096 501 MobiDBLite consensus disorder prediction 1 52 - -
Gma08g03096 501 MobiDBLite consensus disorder prediction 25 39 - -
Gma08g03096 501 Pfam CDC6, C terminal winged helix domain 412 490 IPR015163 -
Gma08g03096 501 Gene3D - 401 484 IPR036388 -
Gma08g03096 501 SUPERFAMILY "Winged helix" DNA-binding domain 397 500 IPR036390 -
Gma08g03096 501 PIRSF Cdc6 84 501 IPR016314 GO:0006270|GO:0051301
Gma08g03096 501 Pfam AAA domain 129 245 IPR003593 -
Gma08g03096 501 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 15 499 - -
Gma08g03096 501 SMART Cdc6_C_2 412 491 IPR015163 -
Gma08g03096 501 CDD Cdc6_C 405 487 IPR015163 -
Gma08g03096 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 346 IPR027417 -
Gma08g03096 501 Gene3D - 277 400 - -
Gma08g03096 501 Gene3D - 89 276 IPR027417 -
Gma08g03096 501 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 15 499 - -
Gma08g03096 501 Coils Coil 337 357 - -
Gma08g03096 501 CDD AAA 114 272 - -
Gma08g03096 501 Pfam AAA lid domain 306 342 IPR041083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03096 Gma-Chr8 47682067 47687182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03096 20 501 Core DNA Replication Machinery Family AT2G29680 56.823 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03096 K02213 - gmx:100791200 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00629 18 6233735 6238661 Gma08g03096 08 47682067 47687182 GST