Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g03094 ATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCCTCAGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCAGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGATGTTTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTATATTTTACTCTGATCGTTTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGtggggagagtatggagaatgctttgagagcatgctgtaaaggtataaagattgggaaaattttaattcacagagaaggTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTGACATCGGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGATGAGCAAGTGGTAGTTTCTTCCCAGTAG 1434 0.3724 MDAKSAVELMESSSEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDTKQLLHVMDKLKHGEAVDIPKYDFKSYKSDDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQVVVSSQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g03094 477 Gene3D - 43 249 IPR027417 -
Gma08g03094 477 PANTHER URIDINE KINASE 15 468 - -
Gma08g03094 477 PRINTS Uridine kinase signature 47 64 - -
Gma08g03094 477 PRINTS Uridine kinase signature 77 88 - -
Gma08g03094 477 PRINTS Uridine kinase signature 122 137 - -
Gma08g03094 477 PRINTS Uridine kinase signature 178 188 - -
Gma08g03094 477 PRINTS Uridine kinase signature 192 203 - -
Gma08g03094 477 PRINTS Uridine kinase signature 214 227 - -
Gma08g03094 477 PANTHER URIDINE KINASE 15 468 - -
Gma08g03094 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 239 IPR027417 -
Gma08g03094 477 Pfam Phosphoribulokinase / Uridine kinase family 49 234 IPR006083 GO:0005524|GO:0016301
Gma08g03094 477 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Gma08g03094 477 Gene3D - 250 465 IPR029057 -
Gma08g03094 477 TIGRFAM udk: uridine kinase 46 246 IPR000764 -
Gma08g03094 477 CDD PRTases_typeI 323 438 IPR000836 -
Gma08g03094 477 CDD UMPK 49 246 IPR000764 -
Gma08g03094 477 Pfam Uracil phosphoribosyltransferase 264 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g03094 Gma-Chr8 47642421 47649708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g03094 1 468 PRT Gene Family AT4G26510 83.404 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g03094 K00876 - gmx:100792258 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00681 18 6935377 6941589 Gma08g03094 08 47642421 47649708 GST
Gma08g03094 08 47642421 47649708 Gma14g00105 14 858693 865796 PCT
Gma08g03094 08 47642421 47649708 Gma02g02834 02 53833066 53839913 PCT
Gma14g00105 14 858693 865796 Gma08g03094 08 47642421 47649708 PCT
Gma02g02834 02 53833066 53839913 Gma08g03094 08 47642421 47649708 PCT